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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0546400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.76 (0.0602) R2 : 0.62
β1 : 1.48 (0.226) R2dD : 0.0427 R2D : 0.00926
β2 : 2.62 (0.148) R2dC : 0.263 R2C : 0.164
β3 : -3.81 (0.316) R2dE : 0.169 R2E : 0.0162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.4 (1.03) R2dD*E : 0.167 R2D*E : -0.00549
γ1 : 1.45 (0.122) R2dN8 : 0.162 R2N8 : 0.0402
σ : 1.06
deviance : 515.73
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_____
C
peak time of C : 17.5
E
wheather : radiation
threshold : 41.41
memory length : 5342
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.33
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
507.42 1.06 5.75 1.49 2.59 -3.4 2.04 -11.6 1.5 17.5 40 5342 6.35 --
557.4 1.1 5.9 2.15 2.69 -2.78 1.87 -- 1.69 17.5 -1.835 2996 6.85 --
515.73 1.06 5.76 1.48 2.62 -3.81 -- -12.4 1.45 17.5 41.41 5342 6.33 --
561.98 1.1 5.86 2.1 2.67 -2.66 -- -- 1.8 17.3 -0.6892 3008 7.1 --
844.93 1.35 5.66 1.31 -- -3.47 -- -11.6 1.54 -- 41.33 5635 6.62 --
737.02 1.27 5.96 2.57 2.62 -- 2.25 -- 1.32 17.1 -- -- -- --
749.82 1.28 5.95 2.58 2.64 -- -- -- 1.33 17.1 -- -- -- --
558.22 1.1 5.73 2.75 -- -4.7 -- -- 2.17 -- -27.9 2545 8.98 --
645.43 1.18 5.84 -- 2.59 -2.84 -- -- 1.96 17.2 -5.261 23206 6.97 --
1114.85 1.56 5.92 2.48 -- -- -- -- 1.27 -- -- -- -- --
924.68 1.42 6.02 -- 2.59 -- -- -- 1.05 17.1 -- -- -- --
653.68 1.19 5.72 -- -- -5.26 -- -- 2.12 -- -53.62 20962 7.25 --
1277.31 1.67 5.99 -- -- -- -- -- 0.991 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 467.76 temperature 30.0 43200 < th dose independent rect. 18 10
2 467.80 temperature 30.0 43200 < th dose independent rect. 18 3
5 468.02 temperature 30.0 43200 < th dose independent rect. 18 6
6 468.05 temperature 30.0 43200 < th dose independent rect. 18 12
11 468.27 temperature 30.0 43200 < th dose independent rect. 18 14
15 469.80 temperature 30.0 43200 > th dose independent rect. 18 1
29 470.72 temperature 30.0 43200 > th dose dependent rect. 17 2
107 476.56 temperature 30.0 43200 > th dose dependent sin 12 NA
111 477.09 precipitation 0.1 43200 < th dose independent rect. 6 14
112 477.09 precipitation 0.1 43200 < th dose dependent rect. 6 14
113 477.12 precipitation 0.1 43200 > th dose independent rect. 6 14
214 480.35 precipitation 0.1 43200 > th dose independent sin 23 NA
215 480.38 precipitation 0.1 43200 < th dose independent sin 23 NA
216 480.38 precipitation 0.1 43200 < th dose dependent sin 23 NA
219 480.56 precipitation 0.1 43200 > th dose dependent sin 2 NA
220 480.58 temperature 30.0 43200 > th dose independent sin 12 NA
223 480.87 temperature 30.0 43200 < th dose independent sin 12 NA
358 482.51 temperature 30.0 43200 > th dose independent rect. 16 20
359 482.53 temperature 30.0 43200 < th dose independent rect. 16 20
380 482.61 temperature 30.0 43200 > th dose dependent no NA NA
510 483.26 temperature 25.0 14400 > th dose dependent rect. 21 4
516 483.45 temperature 30.0 43200 > th dose independent rect. 11 1
563 483.78 temperature 30.0 43200 < th dose independent rect. 11 1
656 484.61 temperature 30.0 43200 > th dose independent rect. 10 9
708 484.81 temperature 30.0 43200 < th dose independent rect. 10 11
709 484.81 temperature 30.0 43200 < th dose independent rect. 10 17
719 484.82 temperature 30.0 43200 < th dose independent rect. 10 22
721 484.83 temperature 30.0 43200 < th dose independent rect. 10 9
853 485.24 temperature 30.0 43200 > th dose independent no NA NA
962 485.40 temperature 30.0 43200 < th dose independent rect. 7 14
983 485.41 temperature 30.0 43200 < th dose independent rect. 2 19