Os10g0544900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2C-like protein.
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Os10g0544900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2C-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.68 | 0.238 | 11 | -0.123 | 0.627 | -0.545 | 0.552 | -1.29 | 0.0825 | 21 | 24.1 | 10 | -- | -- |
| 26.57 | 0.24 | 11 | 0.0444 | 0.624 | -0.642 | 0.635 | -- | 0.123 | 21 | 24.36 | 14 | -- | -- |
| 26.66 | 0.24 | 11 | -0.158 | 0.621 | -0.54 | -- | -1.57 | 0.0747 | 20.9 | 24.05 | 7 | -- | -- |
| 27.97 | 0.246 | 11 | 0.0238 | 0.621 | -0.667 | -- | -- | 0.129 | 20.8 | 24.33 | 10 | -- | -- |
| 48.21 | 0.323 | 11 | -0.147 | -- | -0.637 | -- | -1.32 | 0.102 | -- | 22.24 | 5 | -- | -- |
| 32.75 | 0.268 | 11 | -0.0527 | 0.674 | -- | 0.724 | -- | 0.056 | 22.5 | -- | -- | -- | -- |
| 34.88 | 0.277 | 11 | -0.081 | 0.672 | -- | -- | -- | 0.0545 | 22.4 | -- | -- | -- | -- |
| 49.32 | 0.327 | 11 | 0.052 | -- | -0.725 | -- | -- | 0.154 | -- | 23.17 | 4 | -- | -- |
| 27.97 | 0.246 | 11 | -- | 0.62 | -0.669 | -- | -- | 0.124 | 20.8 | 24.38 | 7 | -- | -- |
| 62.48 | 0.369 | 11 | -0.07 | -- | -- | -- | -- | 0.0568 | -- | -- | -- | -- | -- |
| 35.05 | 0.277 | 11 | -- | 0.672 | -- | -- | -- | 0.0635 | 22.4 | -- | -- | -- | -- |
| 49.37 | 0.327 | 11 | -- | -- | -0.714 | -- | -- | 0.148 | -- | 23.2 | 3 | -- | -- |
| 62.61 | 0.369 | 11 | -- | -- | -- | -- | -- | 0.0645 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.45 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 24 | 25.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 28 | 25.11 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 37 | 25.30 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 54 | 25.45 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 61 | 25.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 99 | 25.60 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 102 | 25.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 22 |
| 110 | 25.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 121 | 25.70 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 9 |
| 131 | 25.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 188 | 25.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 191 | 25.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 200 | 25.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 212 | 25.96 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 216 | 25.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 223 | 25.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 231 | 25.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 237 | 25.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 239 | 25.99 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 14 |
| 281 | 26.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 393 | 26.16 | temperature | 30 | 30 | < th | dose dependent | sin | 1 | NA |
| 498 | 26.26 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 9 |
| 505 | 26.27 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 19 |
| 507 | 26.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 7 |
| 515 | 26.28 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 17 |
| 590 | 26.38 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 15 |
| 619 | 26.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 693 | 26.52 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 720 | 26.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 8 |
| 916 | 26.76 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 926 | 26.78 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 5 | 8 |