Os10g0543400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to chitinase [Oryza sativa (japonica cultivar-group)].
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Os10g0543400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to chitinase [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.59 | 0.761 | 7.94 | 0.733 | 0.772 | 1.56 | 0.0715 | 5.14 | 2.68 | 20.8 | 1008 | 11620 | -- | -- |
| 281.17 | 0.781 | 7.98 | 0.171 | 0.771 | 2.29 | -0.149 | -- | 2.75 | 21 | 1007 | 12075 | -- | -- |
| 262.6 | 0.755 | 7.94 | 0.72 | 0.773 | 1.56 | -- | 5.12 | 2.68 | 20.8 | 1008 | 11653 | -- | -- |
| 281.03 | 0.781 | 7.99 | 0.195 | 0.781 | 2.3 | -- | -- | 2.75 | 21 | 1007 | 11983 | -- | -- |
| 296.11 | 0.801 | 7.93 | 0.721 | -- | 1.59 | -- | 5.13 | 2.67 | -- | 1008 | 12074 | -- | -- |
| 382.29 | 0.917 | 8.05 | 0.544 | 0.769 | -- | 0.0911 | -- | 2.44 | 20.8 | -- | -- | -- | -- |
| 382.31 | 0.916 | 8.05 | 0.541 | 0.769 | -- | -- | -- | 2.44 | 20.8 | -- | -- | -- | -- |
| 316.05 | 0.828 | 7.97 | 0.197 | -- | 2.28 | -- | -- | 2.75 | -- | 1007 | 12010 | -- | -- |
| 282 | 0.782 | 7.99 | -- | 0.782 | 2.34 | -- | -- | 2.73 | 21 | 1007 | 11995 | -- | -- |
| 416 | 0.953 | 8.03 | 0.541 | -- | -- | -- | -- | 2.44 | -- | -- | -- | -- | -- |
| 390.03 | 0.924 | 8.07 | -- | 0.768 | -- | -- | -- | 2.38 | 20.9 | -- | -- | -- | -- |
| 317.06 | 0.829 | 7.97 | -- | -- | 2.32 | -- | -- | 2.72 | -- | 1007 | 12012 | -- | -- |
| 423.7 | 0.961 | 8.05 | -- | -- | -- | -- | -- | 2.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 263.39 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 4 | 264.21 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 5 | 264.38 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 11 | 264.70 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 16 | 265.00 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 26 | 265.38 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 43 | 265.84 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 59 | 266.15 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 64 | 266.27 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 14 |
| 73 | 266.43 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 77 | 266.50 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 107 | 266.83 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 133 | 267.10 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 140 | 267.15 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 145 | 267.19 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 149 | 267.19 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 210 | 267.49 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 211 | 267.52 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 220 | 267.56 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 285 | 268.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 321 | 268.81 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 421 | 269.58 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 423 | 269.62 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 453 | 269.94 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 485 | 270.29 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 489 | 270.35 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 491 | 270.36 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 503 | 270.41 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 508 | 270.46 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 536 | 270.66 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 556 | 270.81 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 568 | 270.86 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 652 | 271.40 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 659 | 271.48 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 688 | 271.68 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 703 | 271.77 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 789 | 272.47 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 882 | 273.61 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 922 | 274.23 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 981 | 274.84 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |