Os10g0541000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Seven transmembrane protein Mlo2.
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Os10g0541000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Seven transmembrane protein Mlo2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.78 | 0.341 | 10.4 | -0.848 | 2.35 | 1.29 | -0.0999 | -3.51 | -0.309 | 7.17 | 27.17 | 9 | -- | -- |
| 54.81 | 0.347 | 10.4 | -0.583 | 2.36 | 0.973 | -0.0622 | -- | -0.263 | 7.2 | 26.8 | 8 | -- | -- |
| 52.5 | 0.34 | 10.4 | -0.844 | 2.35 | 1.31 | -- | -3.54 | -0.308 | 7.18 | 27.2 | 8 | -- | -- |
| 54.82 | 0.347 | 10.4 | -0.585 | 2.36 | 0.975 | -- | -- | -0.263 | 7.2 | 26.8 | 8 | -- | -- |
| 333.14 | 0.855 | 10.5 | -0.841 | -- | 0.774 | -- | -5.61 | -0.28 | -- | 27.6 | 8 | -- | -- |
| 67.59 | 0.385 | 10.4 | -0.461 | 2.25 | -- | -0.158 | -- | -0.248 | 7.63 | -- | -- | -- | -- |
| 67.66 | 0.385 | 10.4 | -0.465 | 2.25 | -- | -- | -- | -0.247 | 7.63 | -- | -- | -- | -- |
| 338.33 | 0.857 | 10.5 | -0.474 | -- | 0.282 | -- | -- | -0.219 | -- | 27.6 | 2 | -- | -- |
| 63.57 | 0.373 | 10.4 | -- | 2.33 | 0.839 | -- | -- | -0.198 | 7.27 | 26.8 | 8 | -- | -- |
| 339.66 | 0.861 | 10.5 | -0.434 | -- | -- | -- | -- | -0.214 | -- | -- | -- | -- | -- |
| 73.36 | 0.401 | 10.4 | -- | 2.25 | -- | -- | -- | -0.196 | 7.65 | -- | -- | -- | -- |
| 269.05 | 0.764 | 10.4 | -- | -- | -1.6 | -- | -- | -0.0548 | -- | 24.5 | 590 | -- | -- |
| 344.63 | 0.867 | 10.4 | -- | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.50 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 8 | 50.12 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 14 |
| 9 | 50.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 11 | 50.25 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 13 |
| 13 | 50.29 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 2 |
| 20 | 50.50 | temperature | 30 | 10 | < th | dose independent | rect. | 6 | 14 |
| 69 | 51.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 73 | 51.83 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 112 | 52.48 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 14 |
| 118 | 52.54 | temperature | 25 | 10 | > th | dose dependent | sin | 23 | NA |
| 121 | 52.60 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 135 | 52.74 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 5 |
| 164 | 53.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 194 | 53.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 202 | 53.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 212 | 53.46 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 16 |
| 218 | 53.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 229 | 53.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 234 | 53.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 260 | 53.82 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 1 |
| 278 | 53.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 12 |
| 291 | 54.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 308 | 54.16 | temperature | 30 | 30 | < th | dose independent | rect. | 15 | 19 |
| 331 | 54.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 384 | 54.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 14 |
| 389 | 54.66 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 6 |
| 406 | 54.73 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 19 |
| 408 | 54.74 | humidity | 80 | 90 | < th | dose independent | rect. | 10 | 5 |
| 419 | 54.79 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 14 |
| 446 | 54.90 | humidity | 50 | 90 | > th | dose dependent | rect. | 6 | 13 |
| 463 | 54.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 14 |
| 480 | 55.04 | temperature | 30 | 90 | < th | dose independent | rect. | 13 | 22 |
| 510 | 55.17 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 13 |
| 518 | 55.20 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 534 | 55.26 | humidity | 80 | 10 | < th | dose independent | rect. | 10 | 6 |
| 536 | 55.27 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 1 |
| 545 | 55.29 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 6 |
| 561 | 55.33 | atmosphere | 995 | 90 | > th | dose independent | rect. | 5 | 14 |
| 578 | 55.43 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 634 | 55.65 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 4 |
| 670 | 55.73 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 14 |
| 699 | 55.81 | atmosphere | 995 | 30 | > th | dose independent | rect. | 15 | 19 |
| 733 | 55.92 | temperature | 30 | 90 | < th | dose independent | rect. | 15 | 4 |
| 739 | 55.94 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 5 |
| 773 | 56.03 | radiation | 40 | 270 | < th | dose independent | rect. | 12 | 21 |
| 783 | 56.05 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 796 | 56.10 | humidity | 60 | 270 | > th | dose independent | rect. | 14 | 18 |
| 808 | 56.13 | humidity | 80 | 270 | < th | dose independent | rect. | 2 | 12 |
| 809 | 56.13 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 861 | 56.28 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 878 | 56.32 | temperature | 30 | 10 | < th | dose independent | sin | 0 | NA |
| 888 | 56.35 | atmosphere | 995 | 10 | > th | dose independent | rect. | 6 | 14 |
| 890 | 56.36 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 12 |
| 907 | 56.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 20 |
| 910 | 56.41 | temperature | 30 | 90 | < th | dose independent | rect. | 13 | 6 |
| 914 | 56.42 | radiation | 30 | 270 | < th | dose independent | rect. | 13 | 19 |
| 972 | 56.52 | temperature | 30 | 10 | < th | dose independent | rect. | 15 | 23 |