Os10g0540200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Selenium-binding protein-like.
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Os10g0540200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Selenium-binding protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.11 | 0.655 | 7.85 | -1.57 | 2.01 | -2.22 | 1.35 | 0.0945 | -0.698 | 6.15 | 24.9 | 6556 | -- | -- |
| 194.01 | 0.649 | 7.86 | -1.55 | 2 | -2.22 | 1.34 | -- | -0.724 | 6.15 | 24.89 | 6571 | -- | -- |
| 198.47 | 0.656 | 7.86 | -1.55 | 1.98 | -2.22 | -- | 0.0702 | -0.713 | 6.11 | 24.96 | 6691 | -- | -- |
| 198.4 | 0.656 | 7.86 | -1.53 | 2.01 | -2.21 | -- | -- | -0.726 | 6.09 | 24.89 | 6571 | -- | -- |
| 389.93 | 0.92 | 7.91 | -1.38 | -- | -2.25 | -- | -0.471 | -0.785 | -- | 24.8 | 8475 | -- | -- |
| 370.24 | 0.902 | 7.72 | -0.471 | 2.02 | -- | 1.3 | -- | -0.0814 | 5.75 | -- | -- | -- | -- |
| 374.36 | 0.906 | 7.72 | -0.463 | 2.02 | -- | -- | -- | -0.087 | 5.7 | -- | -- | -- | -- |
| 389.84 | 0.92 | 7.93 | -1.59 | -- | -2.33 | -- | -- | -0.852 | -- | 24.84 | 8475 | -- | -- |
| 249.8 | 0.736 | 7.86 | -- | 2.1 | -1.92 | -- | -- | -0.591 | 5.91 | 26.61 | 6825 | -- | -- |
| 586.88 | 1.13 | 7.75 | -0.4 | -- | -- | -- | -- | -0.0389 | -- | -- | -- | -- | -- |
| 380.02 | 0.912 | 7.71 | -- | 2.02 | -- | -- | -- | -0.0354 | 5.71 | -- | -- | -- | -- |
| 422.56 | 0.957 | 7.77 | -- | -- | -1.89 | -- | -- | -0.182 | -- | 28.7 | 5611 | -- | -- |
| 591.1 | 1.13 | 7.74 | -- | -- | -- | -- | -- | 0.00547 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 22 | 197.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 18 |
| 23 | 197.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 20 |
| 34 | 198.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 38 | 198.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 45 | 198.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 53 | 198.20 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 62 | 198.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 76 | 198.34 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 166 | 199.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 170 | 199.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 258 | 200.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 273 | 201.11 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 387 | 202.24 | temperature | 20 | 4320 | > th | dose dependent | sin | 15 | NA |
| 531 | 203.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 567 | 203.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 573 | 203.31 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 582 | 203.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 5 |