Os10g0540100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0540100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	9.23	(0.0262)	R²	:	0.617
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	0.924	(0.0619)	R²_dC	:	0.188	R²_C	:	0.174
β₃	:	-1.75	(0.0788)	R²_dE	:	0.476	R²_E	:	0.295
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.576	(0.0582)	R²_dN8	:	0.124	R²_N8	:	-0.0657
σ	:	0.483
deviance	:	107.36
__

_____

C
peak time of C	:	22.6
E
wheather	:	temperature
threshold	:	24.54
memory length	:	47520
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
93.32	0.454	9.13	1.42	0.856	-1.66	-0.63	-0.744	-0.213	22.1	30.04	1278	--	--
93.72	0.451	9.15	1.28	0.848	-1.64	-0.617	--	-0.241	22.1	31.18	1266	--	--
94.85	0.454	9.13	1.41	0.856	-1.65	--	-0.549	-0.212	22	30.4	1271	--	--
95.07	0.454	9.14	1.3	0.849	-1.62	--	--	-0.216	22	31.62	1258	--	--
117.49	0.505	9.14	1.21	--	-2.06	--	-0.134	-0.27	--	29.76	846	--	--
136.15	0.547	9.07	1.77	0.948	--	-0.515	--	0.102	22.6	--	--	--	--
137.24	0.549	9.07	1.79	0.951	--	--	--	0.103	22.6	--	--	--	--
117.24	0.504	9.14	1.21	--	-2.14	--	--	-0.322	--	29.8	832	--	--
107.36	0.483	9.23	--	0.924	-1.75	--	--	-0.576	22.6	24.54	47520	--	--
192.85	0.649	9.05	1.81	--	--	--	--	0.108	--	--	--	--	--
222	0.697	9.12	--	0.964	--	--	--	-0.0966	22.7	--	--	--	--
150.89	0.572	9.2	--	--	-2.64	--	--	-0.556	--	29.27	863	--	--
279.32	0.78	9.09	--	--	--	--	--	-0.0933	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	90.52	temperature	10	270	> th	dose dependent	rect.	2	15
6	91.46	temperature	30	270	< th	dose dependent	rect.	5	21
9	91.74	temperature	15	720	> th	dose dependent	rect.	19	19
11	91.85	temperature	30	270	< th	dose dependent	rect.	6	19
19	92.18	temperature	30	720	< th	dose dependent	rect.	21	16
48	92.80	temperature	15	720	> th	dose dependent	sin	8	NA
56	92.91	temperature	30	720	< th	dose dependent	rect.	17	19
63	93.06	temperature	30	720	< th	dose dependent	sin	8	NA
108	93.54	temperature	15	30	> th	dose dependent	rect.	3	17
119	93.63	temperature	15	1440	> th	dose dependent	rect.	15	16
186	93.82	temperature	15	1440	> th	dose dependent	rect.	23	14
194	93.82	temperature	15	1440	> th	dose dependent	rect.	11	20
286	93.90	temperature	10	1440	> th	dose dependent	rect.	1	9
325	93.92	temperature	30	1440	< th	dose dependent	rect.	9	22
326	93.92	temperature	30	1440	< th	dose dependent	rect.	11	22
329	93.93	temperature	10	1440	> th	dose dependent	rect.	2	7
399	93.97	temperature	30	1440	< th	dose dependent	rect.	23	23
410	93.99	temperature	30	1440	< th	dose dependent	no	NA	NA
411	93.99	temperature	30	1440	< th	dose dependent	rect.	1	9
601	94.14	temperature	30	1440	< th	dose dependent	rect.	5	23
602	94.15	temperature	15	1440	> th	dose dependent	no	NA	NA
617	94.16	temperature	15	1440	> th	dose dependent	rect.	23	23