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Os10g0539600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcium-dependent protein kinase 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.88 (0.0342) R2 : 0.449
β1 : -1.11 (0.126) R2dD : 0.0983 R2D : 0.069
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.74 (0.115) R2dE : 0.283 R2E : 0.278
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.595 (0.0731) R2dN8 : 0.107 R2N8 : 0.0387
σ : 0.641
deviance : 189.23
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C
peak time of C : --
E
wheather : temperature
threshold : -0.5025
memory length : 116
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.58
open length of G : 19.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.94 0.621 5.86 -1.06 0.478 -1.69 1.06 0.4 -0.563 11.4 9.242 63 8.97 19.5
175.09 0.616 5.86 -1.07 0.488 -1.73 1.07 -- -0.554 11.6 9.773 65 8.96 19.5
179.24 0.624 5.85 -1.01 0.463 -1.75 -- 0.699 -0.561 12.1 9.188 67 8.92 19.5
179.73 0.624 5.86 -1.02 0.491 -1.78 -- -- -0.551 12.4 9.644 67 8.95 19.5
190.58 0.643 5.86 -1.04 -- -1.73 -- 0.408 -0.528 -- 6.673 82 8.96 19.6
232.6 0.715 5.85 -1.31 0.956 -- 1.21 -- -0.59 7.48 -- -- -- --
236.49 0.72 5.85 -1.29 0.962 -- -- -- -0.593 7.3 -- -- -- --
189.23 0.641 5.88 -1.11 -- -1.74 -- -- -0.595 -- -0.5025 116 8.58 19.7
206.07 0.669 5.8 -- 0.489 -1.87 -- -- -0.409 12.4 11.2 84 8.72 19.8
285.56 0.79 5.87 -1.27 -- -- -- -- -0.577 -- -- -- -- --
280.16 0.783 5.82 -- 0.949 -- -- -- -0.45 7.38 -- -- -- --
219.39 0.69 5.84 -- -- -1.95 -- -- -0.434 -- 6.399 128 8.4 19.9
328.14 0.846 5.84 -- -- -- -- -- -0.436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.76 temperature 10.0 90 > th dose dependent rect. 9 19
2 177.78 temperature 10.0 10 > th dose dependent rect. 9 20
45 190.37 temperature 20.0 270 > th dose dependent rect. 22 4
47 190.76 temperature 15.0 270 > th dose independent rect. 7 20
53 191.12 temperature 15.0 270 > th dose dependent rect. 20 7
54 191.20 wind 1.0 270 > th dose independent rect. 3 4
57 191.45 wind 9.0 270 < th dose independent rect. 7 20
63 192.30 radiation 10.0 270 < th dose independent rect. 3 4
64 192.30 temperature 20.0 90 > th dose independent rect. 9 19
66 192.38 atmosphere 995.0 270 > th dose dependent rect. 3 4
69 192.59 humidity 70.0 270 > th dose independent rect. 3 4
70 192.64 temperature 10.0 270 > th dose dependent rect. 22 14
72 192.75 radiation 40.0 270 < th dose dependent rect. 3 4
76 192.86 temperature 15.0 10 > th dose independent rect. 9 20
77 192.87 wind 9.0 270 < th dose independent rect. 3 4
78 192.87 temperature 10.0 270 > th dose independent rect. 3 4
80 192.87 temperature 30.0 270 < th dose independent rect. 3 4
81 192.87 humidity 50.0 270 > th dose independent rect. 3 4
83 192.87 atmosphere 995.0 270 > th dose independent rect. 3 4
84 192.87 atmosphere 1015.0 270 < th dose independent rect. 3 4
87 192.91 precipitation 0.1 270 < th dose independent rect. 7 20
88 192.91 precipitation 0.1 270 < th dose dependent rect. 7 20
90 192.95 precipitation 0.1 270 < th dose independent rect. 3 4
91 192.95 precipitation 0.1 270 < th dose dependent rect. 3 4
92 192.98 wind 9.0 270 < th dose independent rect. 6 22
96 193.10 atmosphere 1000.0 10 > th dose dependent rect. 5 4
102 193.27 atmosphere 995.0 270 > th dose dependent rect. 4 2
104 193.42 radiation 10.0 270 < th dose independent rect. 4 2
108 193.61 wind 9.0 90 < th dose independent rect. 9 19
110 193.66 temperature 10.0 270 > th dose dependent rect. 4 2
112 193.70 radiation 10.0 270 < th dose dependent rect. 4 2
115 193.85 wind 9.0 10 < th dose independent rect. 9 20
116 193.89 temperature 10.0 10 > th dose dependent rect. 5 4
119 194.01 temperature 10.0 270 > th dose dependent rect. 18 9
125 194.32 temperature 10.0 270 > th dose dependent rect. 3 4
137 194.53 wind 9.0 270 < th dose independent rect. 4 2
138 194.53 temperature 10.0 270 > th dose independent rect. 4 2
140 194.53 temperature 30.0 270 < th dose independent rect. 4 2
141 194.53 humidity 50.0 270 > th dose independent rect. 4 2
144 194.53 atmosphere 995.0 270 > th dose independent rect. 4 2
145 194.53 atmosphere 1010.0 270 < th dose independent rect. 4 2
155 194.59 precipitation 0.1 270 < th dose independent rect. 4 2
156 194.59 precipitation 0.1 270 < th dose dependent rect. 4 2
160 194.68 precipitation 0.1 10 < th dose independent rect. 9 20
161 194.68 precipitation 0.1 10 < th dose dependent rect. 9 20
164 194.75 wind 7.0 10 < th dose independent rect. 5 4
166 194.75 temperature 10.0 10 > th dose independent rect. 5 4
168 194.75 temperature 30.0 10 < th dose independent rect. 5 4
169 194.75 humidity 50.0 10 > th dose independent rect. 5 4
171 194.75 atmosphere 995.0 10 > th dose independent rect. 5 4
172 194.75 atmosphere 1015.0 10 < th dose independent rect. 5 4
175 194.78 radiation 40.0 10 < th dose independent rect. 5 4
178 194.79 wind 1.0 30 > th dose independent rect. 5 4
180 194.81 atmosphere 995.0 270 > th dose independent rect. 7 20
198 194.95 precipitation 0.1 10 < th dose independent rect. 5 4
199 194.95 precipitation 0.1 10 < th dose dependent rect. 5 4
203 195.01 humidity 50.0 270 > th dose dependent rect. 3 4
227 195.16 precipitation 0.1 270 < th dose independent rect. 6 22
229 195.16 precipitation 0.1 270 < th dose dependent rect. 6 22
240 195.30 radiation 40.0 90 < th dose dependent rect. 5 4
266 195.59 atmosphere 995.0 10 > th dose independent rect. 9 20
268 195.62 temperature 10.0 1440 > th dose independent rect. 5 5
271 195.62 atmosphere 995.0 1440 > th dose independent rect. 5 5
272 195.62 atmosphere 1015.0 1440 < th dose independent rect. 5 5
273 195.62 temperature 10.0 1440 > th dose independent rect. 10 19
310 196.21 humidity 50.0 90 > th dose dependent rect. 5 4
317 196.36 atmosphere 1015.0 270 < th dose independent rect. 7 20
328 196.53 atmosphere 1015.0 10 < th dose independent rect. 9 20
333 196.63 humidity 50.0 30 > th dose independent rect. 9 20
355 196.94 radiation 1.0 270 < th dose independent rect. 3 8
357 196.98 humidity 50.0 270 > th dose dependent rect. 4 2
375 197.15 radiation 1.0 30 > th dose independent rect. 5 4
393 197.30 wind 9.0 10 < th dose dependent rect. 5 4
396 197.36 wind 9.0 270 < th dose dependent rect. 3 4
434 197.66 wind 9.0 270 < th dose dependent rect. 7 20
445 197.73 wind 1.0 10 > th dose independent rect. 15 18
465 197.85 radiation 40.0 10 < th dose dependent rect. 5 4
533 198.38 humidity 50.0 4320 > th dose independent rect. 5 5
590 198.72 wind 9.0 270 < th dose dependent rect. 4 2
661 199.26 temperature 15.0 10 > th dose dependent rect. 20 9
681 199.50 temperature 20.0 270 > th dose independent rect. 22 4
706 199.75 temperature 15.0 10 > th dose dependent rect. 22 7
781 200.16 radiation 1.0 270 < th dose dependent rect. 3 8
809 200.45 radiation 1.0 270 < th dose independent rect. 3 14
863 200.95 temperature 20.0 270 > th dose independent rect. 23 2
916 201.23 wind 9.0 90 < th dose dependent rect. 9 19
947 201.33 temperature 30.0 90 < th dose dependent rect. 15 18
983 201.60 temperature 20.0 270 > th dose independent rect. 21 6
989 201.62 temperature 15.0 270 > th dose independent rect. 22 14