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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0537800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.01 (0.134) R2 : -0.332
β1 : 0.124 (0.49) R2dD : 0.00185 R2D : -0.0518
β2 : 1.42 (0.352) R2dC : 0.0804 R2C : -0.00591
β3 : -6 (0.65) R2dE : -0.282 R2E : -0.334
β4 : -0.0541 (1.59) R2dD*C : -0.000372 R2D*C : -0.0509
β5 : -22.6 (2.33) R2dD*E : -0.321 R2D*E : -0.354
γ1 : 2.05 (0.286) R2dN8 : 0.239 R2N8 : 0.209
σ : 1.64
deviance : 1214.26
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_____
C
peak time of C : 4.64
E
wheather : radiation
threshold : 4
memory length : 7
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1214.26 1.64 5.01 0.124 1.42 -6 -0.0541 -22.6 2.05 4.64 4 7 7 1
1603.25 1.88 4.93 0.589 1.24 0.0445 -1.09 -- 2.42 5.44 4 7 7 1
1605.89 1.88 4.93 0.588 1.23 0.0671 -- -0.199 2.43 5.25 4 7 7 1
1595.47 1.86 4.91 0.671 1.28 -1.09 -- -- 2.51 5.18 29.67 4 6.3 1.66
1672.28 1.9 4.94 0.617 -- 0.877 -- -0.179 2.47 -- -44.21 13 7.01 0.9
1603.28 1.88 4.93 0.589 1.24 -- -1.09 -- 2.42 5.45 -- -- -- --
1606 1.88 4.93 0.584 1.23 -- -- -- 2.43 5.26 -- -- -- --
1672.17 1.9 4.94 0.631 -- 0.868 -- -- 2.47 -- -45.22 18 6.96 1.25
1601.88 1.86 4.91 -- 1.27 -1.42 -- -- 2.45 5.18 29.65 4 6.35 1.61
1685.52 1.92 4.94 0.627 -- -- -- -- 2.46 -- -- -- -- --
1615.01 1.88 4.94 -- 1.24 -- -- -- 2.36 5.24 -- -- -- --
1682.72 1.91 4.95 -- -- 0.867 -- -- 2.41 -- -53.54 21 6.97 1.28
1695.9 1.92 4.96 -- -- -- -- -- 2.39 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1196.16 radiation 10.0 43200 > th dose independent rect. 10 1
3 1214.26 radiation 30.0 1440 > th dose independent rect. 7 1
19 1225.41 wind 5.0 43200 > th dose dependent rect. 4 11
22 1226.62 wind 5.0 43200 > th dose dependent sin 4 NA
23 1227.16 wind 5.0 43200 > th dose dependent rect. 19 20
33 1229.61 wind 7.0 43200 > th dose independent rect. 19 20
34 1229.63 wind 7.0 43200 > th dose independent rect. 17 21
42 1230.82 wind 7.0 43200 < th dose independent rect. 19 20
43 1230.84 wind 7.0 43200 < th dose independent rect. 17 21
58 1232.78 temperature 25.0 720 > th dose dependent rect. 19 14
69 1234.21 wind 5.0 43200 > th dose independent sin 3 NA
70 1234.31 wind 5.0 43200 < th dose independent rect. 6 1
74 1234.58 wind 5.0 43200 < th dose independent sin 3 NA
76 1234.82 wind 5.0 43200 > th dose independent rect. 6 1
81 1235.29 wind 5.0 43200 < th dose independent rect. 24 16
83 1235.55 wind 5.0 43200 > th dose independent rect. 24 16
88 1235.89 wind 5.0 43200 > th dose independent rect. 4 11
89 1235.90 wind 7.0 43200 > th dose independent rect. 5 9
90 1235.91 wind 7.0 43200 > th dose independent sin 5 NA
91 1235.93 wind 5.0 43200 > th dose dependent rect. 9 5
93 1235.98 humidity 90.0 43200 > th dose independent rect. 10 1
95 1236.16 wind 5.0 43200 < th dose independent rect. 4 11
98 1236.32 wind 5.0 43200 > th dose independent rect. 2 14
115 1237.17 temperature 25.0 1440 > th dose dependent sin 12 NA
120 1237.27 wind 7.0 43200 < th dose independent rect. 5 9
127 1237.65 wind 3.0 43200 > th dose dependent rect. 6 1
135 1238.16 humidity 90.0 43200 < th dose independent rect. 10 1
192 1241.78 temperature 25.0 1440 > th dose dependent rect. 14 19
244 1244.14 humidity 80.0 43200 > th dose dependent rect. 21 1
247 1244.27 wind 9.0 43200 > th dose independent rect. 19 12
255 1244.50 temperature 30.0 1440 < th dose independent rect. 11 4
257 1244.58 temperature 25.0 1440 > th dose dependent rect. 18 9
267 1244.92 wind 9.0 43200 > th dose dependent rect. 19 12
306 1246.06 temperature 30.0 14400 < th dose independent rect. 11 1
330 1246.73 temperature 30.0 1440 < th dose independent rect. 11 20
333 1246.79 temperature 30.0 1440 < th dose independent rect. 11 18
336 1246.81 temperature 30.0 1440 < th dose independent rect. 11 8
338 1246.82 temperature 30.0 1440 < th dose independent rect. 11 11
348 1246.95 temperature 30.0 1440 < th dose independent rect. 11 16
376 1248.00 temperature 30.0 14400 > th dose independent rect. 11 1
401 1248.30 temperature 30.0 1440 > th dose independent rect. 11 4
404 1248.38 temperature 30.0 1440 > th dose independent rect. 11 8
427 1248.76 temperature 30.0 1440 < th dose independent rect. 18 22
446 1249.36 temperature 30.0 14400 < th dose independent rect. 11 4
469 1249.69 temperature 30.0 1440 < th dose independent sin 18 NA
480 1249.95 temperature 30.0 1440 < th dose independent rect. 13 18
483 1250.02 temperature 30.0 1440 < th dose independent rect. 13 16
486 1250.06 temperature 30.0 1440 < th dose independent rect. 13 6
487 1250.06 temperature 30.0 1440 < th dose independent rect. 13 9
507 1250.24 temperature 30.0 1440 < th dose independent rect. 13 14
523 1250.35 precipitation 0.1 43200 < th dose independent rect. 19 2
524 1250.35 precipitation 0.1 43200 < th dose dependent rect. 19 2
526 1250.36 temperature 30.0 1440 > th dose independent rect. 13 6
542 1250.45 temperature 30.0 14400 > th dose independent rect. 11 4
563 1250.72 temperature 30.0 1440 > th dose independent sin 17 NA
577 1250.96 wind 9.0 43200 < th dose independent rect. 19 12
596 1251.30 temperature 30.0 1440 > th dose dependent rect. 13 3
631 1251.89 temperature 25.0 1440 > th dose dependent rect. 20 3
638 1251.94 wind 3.0 43200 > th dose dependent rect. 19 15
660 1252.23 wind 3.0 43200 > th dose dependent rect. 5 5
661 1252.23 wind 3.0 43200 > th dose dependent rect. 19 13
667 1252.41 precipitation 0.1 43200 > th dose independent rect. 19 2
686 1252.74 temperature 30.0 1440 > th dose independent rect. 18 22
696 1252.98 temperature 25.0 14400 > th dose independent rect. 4 4
704 1253.23 temperature 30.0 1440 < th dose independent rect. 13 23
706 1253.28 temperature 25.0 14400 > th dose dependent rect. 18 2
716 1253.49 wind 3.0 43200 > th dose dependent sin 10 NA
729 1253.69 temperature 30.0 14400 < th dose independent rect. 18 22
733 1253.76 temperature 30.0 1440 < th dose independent rect. 4 15
734 1253.77 temperature 30.0 1440 < th dose independent rect. 4 18
737 1253.78 temperature 30.0 1440 < th dose independent rect. 2 17
739 1253.79 temperature 30.0 1440 < th dose independent rect. 2 20
746 1253.81 humidity 80.0 43200 > th dose dependent rect. 11 2
755 1253.84 temperature 30.0 1440 < th dose independent rect. 21 22
762 1253.86 temperature 30.0 1440 < th dose independent rect. 6 23
768 1253.87 temperature 30.0 1440 < th dose independent rect. 4 23
770 1253.88 temperature 30.0 1440 < th dose independent rect. 6 13
777 1253.89 temperature 30.0 1440 < th dose independent rect. 6 16
783 1253.91 temperature 30.0 1440 < th dose independent no NA NA
786 1253.91 temperature 30.0 1440 > th dose dependent rect. 12 7
858 1254.05 temperature 30.0 1440 > th dose independent rect. 13 2
890 1254.38 temperature 25.0 14400 < th dose independent rect. 4 4
894 1254.46 temperature 30.0 1440 < th dose independent rect. 4 12
895 1254.46 humidity 80.0 43200 > th dose dependent rect. 20 3
898 1254.47 temperature 30.0 1440 < th dose independent rect. 2 14
908 1254.60 temperature 30.0 1440 < th dose independent rect. 21 19
910 1254.61 temperature 30.0 1440 < th dose independent rect. 6 10
914 1254.64 temperature 30.0 14400 < th dose independent rect. 4 12
915 1254.65 temperature 30.0 14400 < th dose independent rect. 6 10
916 1254.65 temperature 30.0 14400 < th dose independent rect. 2 14
918 1254.66 temperature 30.0 14400 < th dose independent rect. 24 16
920 1254.66 temperature 30.0 14400 < th dose independent rect. 21 19
981 1255.21 temperature 25.0 14400 > th dose independent rect. 19 13
987 1255.23 temperature 30.0 14400 < th dose independent rect. 10 21
990 1255.24 temperature 30.0 14400 < th dose independent rect. 10 12
991 1255.24 temperature 30.0 14400 < th dose independent rect. 10 19
993 1255.25 temperature 30.0 14400 < th dose independent rect. 10 15
998 1255.26 temperature 30.0 14400 < th dose independent rect. 10 17