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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0536700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.07 (0.102) R2 : 0.389
β1 : -7.03 (0.617) R2dD : 0.852 R2D : -0.0812
β2 : 0.996 (0.192) R2dC : 0.0363 R2C : -0.0434
β3 : 2.93 (0.282) R2dE : 0.239 R2E : -0.129
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.7 (1.76) R2dD*E : 0.154 R2D*E : -0.475
γ1 : -1.58 (0.232) R2dN8 : 0.164 R2N8 : -0.14
σ : 1.45
deviance : 969.54
__
_____
C
peak time of C : 9.14
E
wheather : temperature
threshold : 22.79
memory length : 1420
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
969.06 1.46 6.08 -7.02 0.997 2.94 -0.379 -8.74 -1.58 9.13 22.79 1414 -- --
1016.91 1.49 5.7 -4.29 1.07 2.13 -0.407 -- -0.621 10.1 25 1369 -- --
969.54 1.45 6.07 -7.03 0.996 2.93 -- -8.7 -1.58 9.14 22.79 1420 -- --
1013.96 1.48 5.7 -4.3 1 2.1 -- -- -0.595 9.4 25.19 1390 -- --
1026.54 1.49 6.1 -6.98 -- 2.87 -- -8.5 -1.56 -- 22.74 1440 -- --
1199 1.62 5.65 -3.56 0.962 -- -0.396 -- -0.355 8.37 -- -- -- --
1199.48 1.62 5.65 -3.57 0.962 -- -- -- -0.354 8.42 -- -- -- --
1071.82 1.52 5.73 -4.3 -- 2.05 -- -- -0.602 -- 25.06 1421 -- --
1462.56 1.78 5.53 -- 0.996 1.27 -- -- 0.152 9.47 27.9 1384 -- --
1251.08 1.65 5.67 -3.57 -- -- -- -- -0.345 -- -- -- -- --
1536.14 1.83 5.56 -- 0.949 -- -- -- 0.0438 8.7 -- -- -- --
1518.17 1.81 5.56 -- -- 1.14 -- -- 0.149 -- 27.8 1416 -- --
1587.09 1.86 5.58 -- -- -- -- -- 0.0515 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 939.79 humidity 70 14400 < th dose dependent rect. 17 16
3 945.50 humidity 70 14400 < th dose dependent rect. 17 4
15 948.32 humidity 60 14400 < th dose independent rect. 16 17
18 949.43 humidity 60 14400 < th dose independent rect. 16 4
19 949.46 humidity 60 14400 > th dose independent rect. 17 16
32 952.32 humidity 60 14400 < th dose dependent rect. 16 18
33 953.46 wind 9 43200 > th dose dependent rect. 20 1
36 954.58 humidity 60 14400 > th dose independent rect. 16 4
38 955.23 humidity 60 14400 > th dose independent rect. 16 13
40 955.31 humidity 60 14400 > th dose independent rect. 16 11
42 955.33 humidity 60 14400 > th dose independent rect. 16 9
48 955.89 humidity 70 14400 < th dose independent rect. 19 13
49 955.91 temperature 30 43200 > th dose independent rect. 15 20
50 956.02 temperature 30 43200 > th dose independent sin 7 NA
51 956.02 temperature 30 43200 < th dose independent rect. 15 20
52 956.17 temperature 30 43200 < th dose independent sin 7 NA
60 956.81 temperature 30 43200 > th dose independent rect. 18 19
64 956.89 temperature 30 43200 > th dose independent rect. 8 5
83 956.98 temperature 30 43200 < th dose independent rect. 18 19
85 957.06 temperature 30 43200 < th dose independent rect. 2 11
87 957.08 temperature 30 43200 < th dose independent rect. 6 7
123 957.39 temperature 30 43200 > th dose dependent rect. 13 1
124 957.39 temperature 30 43200 > th dose dependent rect. 18 21
153 957.58 temperature 30 43200 > th dose dependent rect. 8 7
212 957.81 temperature 30 43200 > th dose dependent sin 5 NA
229 957.95 temperature 30 43200 > th dose dependent rect. 12 23
265 958.12 temperature 30 43200 > th dose independent rect. 12 23
293 958.19 temperature 30 43200 > th dose dependent no NA NA
387 958.21 temperature 30 43200 > th dose dependent rect. 12 7
465 958.32 temperature 30 43200 > th dose independent no NA NA
467 958.32 temperature 30 43200 > th dose independent rect. 8 11
570 958.37 wind 9 43200 > th dose dependent rect. 19 3
582 958.39 temperature 30 43200 < th dose independent rect. 12 23
639 958.56 temperature 30 43200 < th dose independent rect. 2 20
655 958.57 temperature 30 43200 < th dose independent rect. 6 16
665 958.58 temperature 30 43200 < th dose independent rect. 2 17
680 958.59 temperature 30 43200 < th dose independent rect. 6 13
697 958.59 temperature 30 43200 < th dose independent rect. 5 22
704 958.60 temperature 30 43200 < th dose independent no NA NA
705 958.60 temperature 30 43200 > th dose independent rect. 10 1
706 958.60 temperature 30 43200 < th dose independent rect. 8 11
724 958.60 temperature 30 43200 < th dose independent rect. 8 23
725 958.60 temperature 30 43200 < th dose independent rect. 21 23
782 958.68 temperature 30 43200 > th dose independent rect. 16 1
804 958.77 temperature 30 43200 < th dose independent rect. 10 1
826 958.88 temperature 30 43200 < th dose independent rect. 16 1
842 958.90 temperature 25 43200 > th dose dependent rect. 21 13
843 958.91 temperature 25 43200 > th dose dependent rect. 3 7
866 959.02 temperature 25 43200 > th dose dependent rect. 4 5
888 959.12 temperature 25 43200 > th dose dependent rect. 6 3
894 959.18 temperature 30 43200 < th dose independent rect. 16 6
897 959.19 temperature 25 43200 > th dose dependent rect. 7 1
924 959.27 temperature 25 43200 > th dose dependent rect. 21 1
926 959.29 temperature 30 43200 < th dose independent rect. 16 11
993 959.81 temperature 30 43200 > th dose independent rect. 16 3