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Os10g0536600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase, plant/fungal/bacterial family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.65 (0.0353) R2 : 0.834
β1 : -0.454 (0.157) R2dD : 0.00417 R2D : 0.0233
β2 : 2.6 (0.0836) R2dC : 0.363 R2C : 0.476
β3 : -3.44 (0.181) R2dE : 0.162 R2E : 0.357
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.79 (0.735) R2dD*E : 0.0515 R2D*E : 0.104
γ1 : -0.556 (0.0784) R2dN8 : 0.0322 R2N8 : 0.0721
σ : 0.61
deviance : 171.28
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C
peak time of C : 20.9
E
wheather : temperature
threshold : 10.37
memory length : 258
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 22.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.73 0.584 6.68 -0.615 2.65 -3.57 -2.37 5.5 -0.604 20.8 13.32 254 17.1 22.2
177.01 0.62 6.78 -1.1 2.72 -3.44 -2.57 -- -0.745 20.8 15.44 257 17.3 21.9
171.28 0.61 6.65 -0.454 2.6 -3.44 -- 6.79 -0.556 20.9 10.37 258 17.1 22.2
200.04 0.659 6.77 -1.27 2.63 -3.58 -- -- -0.803 20.9 11.13 279 16.8 22.2
262.61 0.755 6.41 0.166 -- -4.12 -- 8.34 -0.4 -- 1.081 563 18.1 19.2
304.72 0.818 6.9 -2.05 2.92 -- -2.77 -- -1.31 21.4 -- -- -- --
332.59 0.854 6.89 -1.95 2.93 -- -- -- -1.31 21.3 -- -- -- --
246.33 0.731 6.61 -1.12 -- -4.86 -- -- -0.643 -- -3.695 788 17.8 18.5
238.18 0.719 6.72 -- 2.69 -4.07 -- -- -0.605 20.7 10.93 268 16.8 22.5
833.05 1.35 6.82 -1.93 -- -- -- -- -1.32 -- -- -- -- --
432.53 0.973 6.85 -- 2.93 -- -- -- -1.09 21.3 -- -- -- --
281.19 0.781 6.61 -- -- -5.03 -- -- -0.563 -- -2.594 793 17.7 18.6
931.56 1.42 6.77 -- -- -- -- -- -1.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.16 temperature 15 270 > th dose dependent rect. 17 22
13 171.32 temperature 20 10 > th dose dependent rect. 20 20
15 171.96 temperature 30 270 < th dose dependent rect. 22 22
26 174.22 temperature 20 10 > th dose dependent rect. 18 23
33 174.76 temperature 25 4320 < th dose dependent rect. 21 1
60 177.21 temperature 10 4320 > th dose dependent rect. 21 1
70 177.56 temperature 10 4320 > th dose dependent rect. 20 4
115 178.68 temperature 25 4320 < th dose dependent sin 15 NA
149 179.00 temperature 25 4320 < th dose dependent rect. 23 1
152 179.04 temperature 10 4320 > th dose dependent rect. 23 1
200 179.52 temperature 30 10 < th dose dependent rect. 13 23
209 179.70 temperature 15 270 > th dose dependent sin 8 NA
233 179.88 temperature 30 10 < th dose dependent rect. 1 23
325 180.48 temperature 10 4320 > th dose dependent sin 15 NA
388 180.75 temperature 30 90 < th dose dependent rect. 11 23
397 180.80 temperature 30 270 < th dose dependent sin 7 NA
424 180.87 temperature 10 4320 > th dose dependent rect. 11 15
485 181.00 temperature 30 10 < th dose dependent rect. 15 23
514 181.07 temperature 10 4320 > th dose dependent rect. 8 18
544 181.11 temperature 10 4320 > th dose dependent rect. 17 19
581 181.19 temperature 30 4320 < th dose dependent no NA NA
585 181.20 temperature 30 4320 < th dose dependent rect. 17 1
621 181.27 temperature 30 4320 < th dose dependent rect. 20 23
658 181.36 temperature 30 4320 < th dose dependent rect. 23 23
745 181.53 temperature 10 4320 > th dose dependent rect. 11 23
785 181.61 temperature 10 4320 > th dose dependent no NA NA
821 181.67 temperature 10 4320 > th dose dependent rect. 20 23
863 181.78 temperature 10 4320 > th dose dependent rect. 23 23