FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0534600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LpimPth3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.79 (0.049) R2 : 0.416
β1 : 2.66 (0.183) R2dD : 0.304 R2D : 0.14
β2 : 1.42 (0.13) R2dC : 0.167 R2C : 0.0633
β3 : 1.55 (0.209) R2dE : 0.0904 R2E : -0.117
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.989 (0.112) R2dN8 : 0.16 R2N8 : -0.0268
σ : 0.906
deviance : 373.29
__
_____
C
peak time of C : 18.1
E
wheather : temperature
threshold : 28.15
memory length : 14
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
366.76 0.9 4.82 2.33 1.44 1.63 0.495 2.07 0.92 18.1 27.58 17 -- --
373.14 0.907 4.79 2.66 1.42 1.54 0.25 -- 0.987 18.2 28.15 14 -- --
367.05 0.899 4.82 2.34 1.42 1.62 -- 1.95 0.922 18.1 27.51 17 -- --
373.29 0.906 4.79 2.66 1.42 1.55 -- -- 0.989 18.1 28.15 14 -- --
454.42 0.998 4.81 2.32 -- 1.56 -- 1.98 0.811 -- 24.1 25 -- --
406.96 0.946 4.86 2.3 1.26 -- 0.499 -- 0.66 19.5 -- -- -- --
407.63 0.945 4.86 2.29 1.26 -- -- -- 0.662 19.5 -- -- -- --
461.16 1 4.78 2.58 -- 1.38 -- -- 0.869 -- 24.2 24 -- --
542.07 1.09 4.9 -- 1.27 0.486 -- -- 0.496 19.1 28.15 14 -- --
492.36 1.04 4.83 2.27 -- -- -- -- 0.642 -- -- -- -- --
545.81 1.09 4.92 -- 1.24 -- -- -- 0.407 19.6 -- -- -- --
623.27 1.17 4.87 -- -- 0.534 -- -- 0.464 -- 24.2 2 -- --
628.3 1.17 4.89 -- -- -- -- -- 0.39 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 360.38 temperature 30 30 < th dose dependent rect. 12 22
11 363.35 temperature 25 10 < th dose dependent rect. 24 21
12 363.60 radiation 10 1440 > th dose independent rect. 10 2
17 364.36 wind 9 43200 > th dose dependent rect. 17 2
21 364.52 wind 9 43200 > th dose dependent rect. 16 5
24 364.67 temperature 20 1440 > th dose dependent rect. 15 1
27 364.89 temperature 20 1440 > th dose dependent rect. 13 3
36 365.29 wind 9 43200 > th dose independent rect. 16 5
43 365.68 wind 9 43200 > th dose dependent rect. 16 7
50 365.93 wind 9 43200 < th dose independent rect. 17 4
64 366.36 temperature 30 720 < th dose dependent rect. 15 6
73 366.50 wind 9 43200 > th dose independent rect. 17 2
81 366.70 temperature 30 720 < th dose dependent rect. 13 10
92 366.95 temperature 30 720 < th dose dependent sin 18 NA
102 367.16 temperature 30 720 < th dose dependent rect. 11 12
119 367.45 temperature 30 720 < th dose dependent rect. 11 14
140 367.79 temperature 10 720 > th dose dependent sin 17 NA
164 368.15 temperature 10 720 > th dose dependent rect. 10 17
184 368.31 temperature 10 720 > th dose dependent rect. 13 14
193 368.36 humidity 90 1440 < th dose dependent rect. 11 7
201 368.39 temperature 20 720 > th dose dependent rect. 15 7
211 368.44 temperature 20 720 > th dose dependent rect. 14 13
213 368.47 wind 9 43200 > th dose independent rect. 16 12
223 368.53 humidity 50 1440 > th dose dependent rect. 11 7
234 368.61 temperature 30 30 < th dose dependent rect. 5 23
257 368.74 temperature 30 10 < th dose dependent rect. 19 23
268 368.82 wind 9 43200 > th dose dependent rect. 16 12
271 368.84 wind 9 43200 > th dose independent rect. 16 9
273 368.84 wind 9 43200 > th dose dependent rect. 16 9
298 368.97 temperature 20 720 > th dose dependent rect. 15 9
329 369.15 temperature 10 720 > th dose dependent rect. 15 9
331 369.16 radiation 10 1440 > th dose independent rect. 9 8
344 369.22 humidity 60 1440 < th dose dependent rect. 14 2
377 369.38 radiation 10 1440 < th dose dependent rect. 9 9
412 369.59 temperature 30 10 < th dose dependent rect. 3 23
417 369.65 radiation 10 1440 < th dose dependent rect. 9 13
421 369.66 radiation 10 1440 < th dose dependent rect. 9 18
428 369.69 radiation 10 1440 < th dose dependent rect. 9 15
477 369.98 temperature 30 10 < th dose dependent no NA NA
500 370.08 temperature 25 10 < th dose dependent rect. 9 23
505 370.11 humidity 90 1440 < th dose dependent rect. 13 5
519 370.17 wind 9 43200 < th dose independent rect. 16 12
534 370.25 temperature 25 30 < th dose dependent rect. 15 23
535 370.26 humidity 50 1440 > th dose dependent rect. 13 5
537 370.26 temperature 30 10 < th dose dependent rect. 17 23
572 370.41 temperature 25 30 < th dose dependent rect. 21 23
575 370.44 humidity 90 1440 < th dose dependent rect. 15 1
579 370.47 humidity 50 1440 > th dose dependent rect. 15 1
586 370.53 wind 9 43200 < th dose independent rect. 16 14
596 370.55 temperature 25 30 < th dose dependent rect. 7 23
646 370.75 atmosphere 1005 14400 > th dose independent rect. 22 1
722 371.08 wind 7 43200 < th dose independent rect. 20 1
746 371.16 temperature 30 1440 < th dose dependent rect. 13 1
775 371.28 temperature 25 720 < th dose independent rect. 15 6
813 371.41 atmosphere 1005 14400 < th dose independent rect. 22 1
856 371.55 temperature 25 10 < th dose dependent rect. 5 16
874 371.62 temperature 25 720 > th dose independent rect. 14 8
875 371.62 temperature 30 1440 < th dose dependent rect. 13 3
890 371.67 humidity 90 1440 < th dose dependent sin 21 NA
934 371.80 humidity 70 720 > th dose independent rect. 17 7