FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0533800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Legume lectin, beta domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.61 (0.0661) R2 : 0.74
β1 : 8.43 (0.323) R2dD : 0.885 R2D : 0.41
β2 : 2.07 (0.156) R2dC : 0.101 R2C : 0.109
β3 : -4.93 (0.37) R2dE : 0.239 R2E : 0.0827
β4 : 3.92 (0.714) R2dD*C : 0.0173 R2D*C : 0.00804
β5 : -16.3 (1.28) R2dD*E : 0.372 R2D*E : -0.8
γ1 : 0.0142 (0.14) R2dN8 : 9.3e-06 R2N8 : -0.0194
σ : 1.12
deviance : 572.78
__
_____
C
peak time of C : 5.56
E
wheather : radiation
threshold : 0.9724
memory length : 7188
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
572.78 1.12 5.61 8.43 2.07 -4.93 3.92 -16.3 0.0142 5.56 0.9724 7188 -- --
807.9 1.33 5.88 6.2 2.3 -0.629 4.69 -- -0.0255 4.2 0.9724 7188 -- --
605.76 1.15 5.59 8.54 2.12 -4.84 -- -16.3 0.064 6.04 0.83 7152 -- --
789.99 1.31 5.99 6.22 2.28 -1.46 -- -- -0.542 5.44 11.48 16120 -- --
837.05 1.35 5.65 8.52 -- -4.97 -- -16.3 0.0563 -- 0.83 7190 -- --
824.21 1.35 5.87 6.19 2.16 -- 4.55 -- -0.0172 5.17 -- -- -- --
873.5 1.38 5.88 6.19 2.21 -- -- -- -0.0371 5.54 -- -- -- --
987.54 1.46 6 5.61 -- -2.03 -- -- -0.475 -- 4.077 15833 -- --
1375.7 1.73 6.46 -- 3.49 -3.49 -- -- -1.94 4.21 0.9828 17674 -- --
1127.43 1.57 5.91 6.26 -- -- -- -- 0.0166 -- -- -- -- --
1883.73 2.03 6.03 -- 2.31 -- -- -- -0.727 5.43 -- -- -- --
974.17 1.45 6.4 -- -- -5.38 -- -- -2.16 -- 0.007312 47520 -- --
2162.3 2.17 6.07 -- -- -- -- -- -0.678 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 533.99 radiation 1.0 43200 < th dose dependent rect. 20 9
3 534.25 radiation 1.0 43200 < th dose dependent rect. 23 6
13 562.73 radiation 1.0 14400 < th dose dependent rect. 18 22
15 563.28 radiation 1.0 14400 < th dose independent rect. 18 11
17 563.77 radiation 1.0 14400 < th dose dependent rect. 18 1
18 563.77 radiation 1.0 14400 < th dose dependent rect. 18 3
24 564.13 radiation 1.0 14400 < th dose independent rect. 18 6
25 564.13 radiation 1.0 14400 < th dose independent rect. 18 9
33 564.21 radiation 1.0 14400 < th dose independent rect. 18 3
37 564.26 radiation 1.0 14400 < th dose independent rect. 18 1
50 569.76 radiation 1.0 14400 < th dose dependent rect. 6 23
51 570.12 radiation 1.0 14400 > th dose independent rect. 18 1
64 570.99 radiation 1.0 14400 < th dose dependent rect. 6 21
66 571.00 radiation 1.0 14400 < th dose dependent rect. 6 19
68 571.04 radiation 1.0 14400 < th dose dependent rect. 6 13
70 571.06 radiation 1.0 14400 < th dose dependent rect. 6 15
134 575.44 radiation 1.0 14400 < th dose dependent rect. 2 17
135 575.44 radiation 1.0 14400 < th dose dependent rect. 2 21
137 575.46 radiation 1.0 14400 < th dose dependent rect. 4 15
139 575.46 radiation 1.0 14400 < th dose dependent rect. 2 19
140 575.46 radiation 1.0 14400 < th dose dependent rect. 4 19
150 575.47 radiation 1.0 14400 < th dose dependent rect. 20 23
164 575.49 radiation 1.0 14400 < th dose dependent rect. 22 21
170 575.51 radiation 1.0 14400 < th dose dependent no NA NA
190 575.68 radiation 1.0 14400 < th dose dependent rect. 12 23
210 575.95 radiation 1.0 14400 < th dose dependent rect. 9 23
212 575.96 radiation 1.0 14400 < th dose dependent sin 22 NA
380 579.58 radiation 1.0 14400 < th dose dependent rect. 2 13
381 579.64 radiation 1.0 14400 < th dose dependent rect. 4 11
384 579.70 radiation 1.0 14400 < th dose dependent rect. 20 19
392 579.90 humidity 90.0 43200 > th dose dependent rect. 3 2
424 580.64 humidity 90.0 14400 < th dose independent rect. 21 6
517 582.85 humidity 90.0 43200 < th dose independent rect. 24 1
632 584.13 radiation 1.0 14400 > th dose independent rect. 18 21
642 584.41 humidity 90.0 14400 < th dose independent rect. 20 10
655 585.21 humidity 80.0 43200 < th dose independent rect. 12 1
663 585.70 radiation 1.0 14400 < th dose independent rect. 18 21
690 586.88 humidity 90.0 43200 > th dose dependent rect. 23 6
701 587.99 atmosphere 1005.0 43200 > th dose independent rect. 16 1
721 589.30 humidity 90.0 43200 > th dose dependent rect. 23 2
723 589.53 humidity 80.0 43200 > th dose independent rect. 11 2
749 590.55 humidity 90.0 14400 > th dose independent rect. 22 4
760 591.17 precipitation 0.1 43200 < th dose independent rect. 5 2
761 591.17 precipitation 0.1 43200 < th dose dependent rect. 5 2
764 591.30 humidity 90.0 43200 > th dose independent rect. 23 1
780 591.80 radiation 1.0 14400 > th dose independent rect. 6 13
820 592.56 temperature 20.0 14400 < th dose independent rect. 5 1
834 593.12 atmosphere 1005.0 43200 < th dose independent rect. 16 1
841 593.35 humidity 90.0 43200 > th dose independent rect. 22 7
855 593.66 humidity 90.0 43200 > th dose dependent rect. 2 9
856 593.68 humidity 90.0 43200 > th dose dependent sin 11 NA
858 593.71 temperature 20.0 14400 > th dose independent rect. 4 1
862 593.75 humidity 80.0 43200 > th dose dependent rect. 10 1
885 594.00 precipitation 0.1 43200 > th dose independent rect. 5 2
891 594.10 radiation 1.0 14400 < th dose independent rect. 6 21
894 594.13 radiation 1.0 14400 < th dose independent rect. 6 19
912 594.22 radiation 1.0 14400 < th dose independent rect. 6 13
926 594.35 precipitation 0.1 43200 > th dose dependent rect. 5 2