Os10g0533000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain containing protein.
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Os10g0533000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.3 | 0.349 | 8.13 | 1.09 | 0.831 | 0.84 | -0.536 | 0.639 | 0.171 | 2.34 | 70.64 | 1184 | -- | -- |
| 55.54 | 0.347 | 8.11 | 1.17 | 0.84 | 0.907 | -0.674 | -- | 0.209 | 2.3 | 71.67 | 1182 | -- | -- |
| 55.91 | 0.348 | 8.12 | 1.06 | 0.832 | 0.861 | -- | 0.837 | 0.176 | 2.32 | 71.3 | 1182 | -- | -- |
| 57.2 | 0.352 | 8.11 | 1.19 | 0.838 | 0.91 | -- | -- | 0.213 | 2.37 | 71.66 | 1192 | -- | -- |
| 72.24 | 0.396 | 8.14 | 0.981 | -- | 0.935 | -- | 0.623 | 0.136 | -- | 75 | 1716 | -- | -- |
| 82.98 | 0.427 | 8.14 | 0.992 | 0.632 | -- | -0.791 | -- | 0.0831 | 2.9 | -- | -- | -- | -- |
| 85.06 | 0.432 | 8.13 | 1.01 | 0.632 | -- | -- | -- | 0.0876 | 3.06 | -- | -- | -- | -- |
| 69.92 | 0.389 | 8.11 | 1.16 | -- | 1.22 | -- | -- | 0.21 | -- | 75.61 | 1745 | -- | -- |
| 94.22 | 0.452 | 8.12 | -- | 0.828 | 0.817 | -- | -- | 0.117 | 1.87 | 71.1 | 1149 | -- | -- |
| 107.91 | 0.485 | 8.13 | 1.04 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 111.94 | 0.495 | 8.16 | -- | 0.652 | -- | -- | -- | -0.0249 | 3.06 | -- | -- | -- | -- |
| 104.57 | 0.476 | 8.14 | -- | -- | 1.24 | -- | -- | 0.0612 | -- | 76.81 | 1752 | -- | -- |
| 136.27 | 0.545 | 8.16 | -- | -- | -- | -- | -- | -0.011 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.91 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 3 | 56.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 11 | 57.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 17 | 57.11 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 29 | 57.20 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 32 | 57.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 118 | 57.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 120 | 57.61 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 126 | 57.62 | humidity | 50 | 1440 | > th | dose dependent | sin | 23 | NA |
| 143 | 57.71 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 218 | 57.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 221 | 57.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 222 | 57.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 223 | 57.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 238 | 58.01 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 243 | 58.02 | humidity | 90 | 1440 | < th | dose dependent | sin | 23 | NA |
| 278 | 58.11 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 312 | 58.19 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 361 | 58.24 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 416 | 58.29 | humidity | 80 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 439 | 58.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 453 | 58.37 | humidity | 70 | 1440 | > th | dose independent | sin | 18 | NA |
| 540 | 58.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 22 |
| 548 | 58.48 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 595 | 58.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 627 | 58.53 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 640 | 58.57 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 689 | 58.64 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 691 | 58.64 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 692 | 58.65 | humidity | 80 | 1440 | < th | dose dependent | sin | 17 | NA |
| 766 | 58.80 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 796 | 58.86 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 835 | 58.97 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 864 | 59.03 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 925 | 59.10 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 970 | 59.15 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 994 | 59.21 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 6 |