FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0531700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0255) R2 : 0.0158
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.145 (0.0536) R2dN8 : 0.0204 R2N8 : 0.0158
σ : 0.48
deviance : 105.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.54 0.466 2.96 -0.0831 0.495 0.405 -1.37 -1.15 0.166 10.9 0.1417 115 -- --
100.04 0.466 2.97 -0.166 0.45 0.363 -0.151 -- 0.146 10.8 0.2198 123 -- --
100.15 0.466 2.96 -0.0974 0.506 0.405 -- -0.166 0.138 11.5 0.1699 190 -- --
99.87 0.465 2.98 -0.171 0.485 0.422 -- -- 0.129 11.7 0.06044 210 -- --
101.83 0.47 2.98 -0.166 -- 0.276 -- -0.228 0.147 -- 10 629 -- --
101.66 0.473 2.98 -0.195 0.233 -- -0.322 -- 0.118 6.32 -- -- -- --
101.92 0.473 2.98 -0.199 0.232 -- -- -- 0.119 6.24 -- -- -- --
102.18 0.471 2.98 -0.166 -- 0.264 -- -- 0.153 -- 10 630 -- --
100.52 0.467 2.98 -- 0.501 0.437 -- -- 0.143 11.8 0.04 206 -- --
104.71 0.478 2.98 -0.192 -- -- -- -- 0.124 -- -- -- -- --
102.96 0.475 2.98 -- 0.229 -- -- -- 0.141 6.29 -- -- -- --
102.88 0.472 2.97 -- -- 0.26 -- -- 0.165 -- 10.01 630 -- --
105.69 0.48 2.98 -- -- -- -- -- 0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.94 temperature 25.0 270 > th dose independent rect. 1 1
3 87.28 temperature 25.0 90 > th dose dependent rect. 1 4
5 87.53 temperature 25.0 90 > th dose dependent rect. 2 2
20 89.00 temperature 25.0 270 > th dose dependent rect. 24 6
37 90.82 atmosphere 1005.0 30 > th dose dependent rect. 2 1
38 90.83 wind 3.0 30 < th dose dependent rect. 2 1
41 90.90 atmosphere 1005.0 30 > th dose independent rect. 2 1
45 90.94 wind 3.0 30 < th dose independent rect. 2 1
49 91.02 humidity 80.0 30 > th dose independent rect. 2 1
55 91.08 humidity 50.0 30 > th dose dependent rect. 2 1
59 91.09 temperature 10.0 30 > th dose independent rect. 2 1
61 91.09 temperature 30.0 30 < th dose independent rect. 2 1
62 91.09 humidity 50.0 30 > th dose independent rect. 2 1
65 91.09 atmosphere 995.0 30 > th dose independent rect. 2 1
67 91.09 atmosphere 1010.0 30 < th dose independent rect. 2 1
69 91.09 radiation 1.0 30 < th dose independent rect. 2 1
74 91.09 precipitation 0.1 30 < th dose independent rect. 2 1
75 91.09 temperature 10.0 30 > th dose independent rect. 3 23
78 91.09 radiation 1.0 30 < th dose dependent rect. 2 1
83 91.09 precipitation 0.1 30 < th dose dependent rect. 2 1
89 91.36 atmosphere 1015.0 30 < th dose dependent rect. 2 1
99 91.66 temperature 30.0 30 < th dose dependent rect. 2 1
109 91.91 wind 9.0 1440 < th dose independent rect. 3 1
110 91.91 temperature 10.0 1440 > th dose independent rect. 3 1
113 91.91 temperature 30.0 1440 < th dose independent rect. 3 1
117 91.91 humidity 50.0 1440 > th dose independent rect. 3 1
126 91.91 atmosphere 995.0 1440 > th dose independent rect. 3 1
127 91.91 radiation 1.0 1440 < th dose independent rect. 3 1
148 91.91 temperature 10.0 1440 > th dose independent rect. 4 23
151 91.91 radiation 1.0 1440 < th dose dependent rect. 3 1
160 91.91 radiation 10.0 43200 < th dose dependent rect. 3 1
164 91.92 wind 1.0 30 > th dose independent rect. 2 1
178 92.22 temperature 25.0 1440 < th dose independent rect. 1 1
179 92.24 atmosphere 1005.0 270 > th dose dependent rect. 1 2
185 92.36 atmosphere 1005.0 10 > th dose dependent rect. 2 4
198 92.50 wind 9.0 30 < th dose independent rect. 3 23
229 92.64 atmosphere 995.0 30 > th dose independent rect. 3 23
248 93.03 radiation 1.0 90 < th dose independent rect. 14 1
249 93.03 radiation 1.0 90 < th dose dependent rect. 14 1
294 93.71 precipitation 0.1 30 < th dose independent rect. 3 23
295 93.71 precipitation 0.1 30 < th dose dependent rect. 3 23
323 93.99 temperature 25.0 720 < th dose independent rect. 21 7
400 94.89 temperature 25.0 720 > th dose independent rect. 17 12
444 95.22 temperature 30.0 30 < th dose independent rect. 3 23
463 95.37 humidity 50.0 30 > th dose independent rect. 3 23
485 95.52 atmosphere 1005.0 10 > th dose independent rect. 2 4
494 95.58 temperature 25.0 720 > th dose independent sin 12 NA
540 95.81 temperature 25.0 720 < th dose independent sin 12 NA
605 96.15 atmosphere 1005.0 270 > th dose independent rect. 1 2
630 96.31 radiation 1.0 270 < th dose independent rect. 8 7
631 96.31 wind 3.0 30 < th dose dependent rect. 2 3
632 96.31 radiation 1.0 270 < th dose dependent rect. 8 7
661 96.46 temperature 25.0 90 > th dose independent rect. 4 1
667 96.47 humidity 80.0 4320 < th dose dependent rect. 1 1
673 96.50 temperature 25.0 90 > th dose dependent rect. 4 1
751 96.79 humidity 90.0 10 < th dose independent rect. 4 1
754 96.79 wind 1.0 10 > th dose independent rect. 5 23
776 96.86 wind 7.0 1440 < th dose independent rect. 5 1
778 96.86 temperature 10.0 1440 > th dose independent rect. 5 1
781 96.86 temperature 30.0 1440 < th dose independent rect. 5 1
785 96.86 humidity 50.0 1440 > th dose independent rect. 5 1
794 96.86 atmosphere 995.0 1440 > th dose independent rect. 5 1
795 96.86 atmosphere 1015.0 1440 < th dose independent rect. 5 1
796 96.86 radiation 20.0 1440 < th dose independent rect. 5 1
805 96.86 temperature 10.0 1440 > th dose independent rect. 6 23
828 96.92 wind 1.0 30 > th dose dependent rect. 4 1
833 96.93 atmosphere 1005.0 90 > th dose dependent rect. 4 1
845 97.01 atmosphere 1005.0 10 > th dose dependent rect. 4 1
867 97.09 humidity 90.0 270 > th dose independent rect. 11 2
870 97.09 humidity 90.0 270 > th dose dependent rect. 11 2
872 97.10 wind 1.0 30 > th dose independent rect. 4 1
924 97.21 atmosphere 995.0 30 > th dose dependent rect. 2 14
934 97.24 radiation 1.0 30 < th dose dependent rect. 2 15
943 97.26 radiation 1.0 30 < th dose independent rect. 2 15
947 97.27 atmosphere 1000.0 30 > th dose independent rect. 16 10
980 97.34 wind 9.0 4320 < th dose independent rect. 3 3
985 97.35 temperature 10.0 1440 > th dose independent rect. 3 3
988 97.35 temperature 30.0 1440 < th dose independent rect. 3 3
993 97.35 humidity 50.0 1440 > th dose independent rect. 3 3