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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0530500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione-S-transferase Cla47.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.8 (0.0336) R2 : 0.572
β1 : -1.72 (0.127) R2dD : 0.195 R2D : 0.0478
β2 : 1.56 (0.0871) R2dC : 0.313 R2C : 0.304
β3 : 1.08 (0.104) R2dE : 0.12 R2E : 0.0208
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.723 (0.074) R2dN8 : 0.125 R2N8 : -0.0172
σ : 0.621
deviance : 177.89
__
_____
C
peak time of C : 5.93
E
wheather : temperature
threshold : 23.03
memory length : 1309
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.24 0.604 15.9 -2.55 1.58 1.41 1.93 -3.12 -0.873 6.22 24.14 1231 -- --
169.09 0.606 15.8 -1.73 1.8 1.29 2.14 -- -0.702 6.44 22.8 926 -- --
174.08 0.614 15.9 -2.48 1.59 1.36 -- -2.83 -0.877 6.03 23.88 1270 -- --
177.89 0.621 15.8 -1.72 1.56 1.08 -- -- -0.723 5.93 23.03 1309 -- --
302.16 0.81 15.9 -2.29 -- 1.45 -- -2.13 -0.808 -- 23.98 1299 -- --
210.92 0.681 15.7 -1.36 1.66 -- 1.86 -- -0.481 5.77 -- -- -- --
219.2 0.693 15.7 -1.35 1.67 -- -- -- -0.49 5.63 -- -- -- --
305.52 0.814 15.8 -1.7 -- 1.25 -- -- -0.689 -- 23.85 1294 -- --
248.56 0.734 15.7 -- 1.6 0.709 -- -- -0.388 5.94 25.3 1222 -- --
363.6 0.891 15.8 -1.3 -- -- -- -- -0.45 -- -- -- -- --
267.16 0.765 15.7 -- 1.65 -- -- -- -0.339 5.67 -- -- -- --
377.43 0.905 15.8 -- -- 0.88 -- -- -0.406 -- 24.3 1295 -- --
407.87 0.943 15.7 -- -- -- -- -- -0.306 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.33 radiation 1 1440 < th dose dependent rect. 9 10
3 164.39 radiation 1 1440 < th dose dependent rect. 9 18
9 164.46 radiation 1 1440 < th dose dependent rect. 9 15
21 164.54 humidity 90 720 > th dose dependent rect. 20 3
56 165.12 radiation 1 1440 < th dose dependent sin 21 NA
61 165.82 wind 5 43200 > th dose dependent rect. 19 2
62 165.88 radiation 1 1440 > th dose independent rect. 9 10
74 165.91 radiation 1 1440 > th dose independent rect. 11 8
117 166.14 temperature 25 1440 > th dose dependent rect. 13 1
135 166.31 radiation 1 1440 < th dose independent rect. 11 8
136 166.33 radiation 1 1440 < th dose independent rect. 9 10
150 166.39 radiation 1 1440 < th dose independent rect. 11 16
153 166.40 radiation 1 1440 < th dose independent rect. 9 18
158 166.44 radiation 1 1440 < th dose independent rect. 11 13
160 166.45 radiation 1 1440 < th dose independent rect. 9 13
161 166.45 radiation 1 1440 < th dose independent rect. 9 15
192 166.59 radiation 1 1440 > th dose independent sin 20 NA
229 166.96 wind 7 43200 < th dose independent rect. 17 4
231 167.02 radiation 1 1440 < th dose independent sin 20 NA
236 167.14 wind 7 43200 > th dose independent rect. 17 4
260 167.54 wind 5 43200 > th dose independent rect. 19 2
261 167.54 wind 9 43200 < th dose independent rect. 19 2
290 167.81 temperature 25 1440 > th dose dependent rect. 12 14
303 167.91 wind 7 43200 > th dose dependent rect. 17 4
349 168.23 wind 5 43200 < th dose independent rect. 20 1
404 168.64 temperature 25 1440 > th dose dependent sin 18 NA
433 168.87 temperature 20 720 > th dose dependent rect. 15 18
490 169.26 temperature 20 270 > th dose dependent rect. 15 20
516 169.41 temperature 25 1440 > th dose dependent rect. 22 20
530 169.44 temperature 25 1440 > th dose independent rect. 13 13
549 169.51 temperature 25 1440 > th dose independent sin 16 NA
601 169.64 temperature 25 1440 > th dose dependent no NA NA
645 169.79 temperature 25 4320 > th dose independent rect. 17 1
686 169.86 humidity 90 720 > th dose dependent rect. 9 15
729 170.01 wind 7 43200 > th dose independent rect. 14 8
742 170.09 wind 7 43200 < th dose independent rect. 13 9
751 170.14 temperature 25 1440 < th dose independent rect. 13 13
762 170.20 temperature 25 1440 < th dose independent rect. 11 15
768 170.21 temperature 25 720 > th dose dependent rect. 17 16
770 170.23 temperature 25 4320 < th dose independent rect. 17 1
784 170.27 temperature 25 1440 > th dose independent rect. 11 21
805 170.35 temperature 25 1440 < th dose independent sin 16 NA
806 170.35 wind 7 43200 < th dose independent rect. 17 1
831 170.43 wind 7 43200 < th dose independent rect. 12 13
839 170.46 radiation 1 43200 < th dose dependent rect. 19 6
856 170.52 wind 7 43200 > th dose independent sin 17 NA
857 170.52 wind 7 43200 < th dose independent sin 17 NA
866 170.55 radiation 1 1440 < th dose dependent rect. 2 17
870 170.57 humidity 90 43200 > th dose independent rect. 21 1
878 170.57 radiation 1 1440 < th dose dependent rect. 23 20
879 170.57 radiation 1 1440 < th dose dependent rect. 21 22
898 170.62 wind 5 43200 > th dose dependent rect. 11 11
902 170.63 radiation 1 1440 < th dose dependent rect. 2 22
932 170.67 radiation 1 1440 < th dose dependent no NA NA
944 170.69 wind 7 43200 > th dose independent rect. 17 1
949 170.69 radiation 1 1440 < th dose dependent rect. 11 23
982 170.77 wind 7 43200 > th dose dependent rect. 14 7