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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0530200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione S-transferase TSI-1 (EC 2.5.1.18) (Glutathione S- transferase 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0486) R2 : 0.117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.74 (0.835) R2dE : 0.0917 R2E : 0.0882
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.349 (0.102) R2dN8 : 0.0291 R2N8 : 0.0256
σ : 0.914
deviance : 385.02
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 81.1
memory length : 93
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.49
open length of G : 1.79

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
373.09 0.908 3.05 0.431 0.195 14.1 0.887 -36.5 -0.291 7.71 80 90 2.51 1.98
375.34 0.902 3.01 0.416 0.237 6.25 0.511 -- -0.292 8.14 80.05 87 2.6 1.72
375.31 0.902 3.05 0.447 0.2 13.7 -- -34.8 -0.291 7.43 79.95 90 2.48 1.99
375.51 0.903 3.04 0.527 0.198 5.73 -- -- -0.295 7.43 81 93 2.6 1.53
377.37 0.905 3.06 0.457 -- 13.9 -- -35.5 -0.289 -- 79.88 90 2.5 1.96
412.16 0.952 3.04 0.51 0.246 -- 0.884 -- -0.316 7.2 -- -- -- --
414.12 0.953 3.04 0.527 0.254 -- -- -- -0.319 6.53 -- -- -- --
377.47 0.905 3.04 0.547 -- 5.79 -- -- -0.293 -- 81.4 94 2.49 1.76
382.84 0.911 3.05 -- 0.204 5.68 -- -- -0.353 7.2 81 92 2.5 1.78
417.49 0.955 3.05 0.533 -- -- -- -- -0.314 -- -- -- -- --
421.43 0.96 3.06 -- 0.261 -- -- -- -0.378 6.42 -- -- -- --
385.02 0.914 3.06 -- -- 5.74 -- -- -0.349 -- 81.1 93 2.49 1.79
424.99 0.962 3.06 -- -- -- -- -- -0.373 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 373.11 humidity 90.0 10 < th dose dependent rect. 3 1
2 373.16 humidity 80.0 90 < th dose independent rect. 2 2
3 373.18 humidity 80.0 90 < th dose dependent rect. 2 2
9 375.24 wind 3.0 720 > th dose dependent rect. 22 2
10 375.31 humidity 90.0 10 < th dose independent rect. 2 2
18 377.28 wind 3.0 720 > th dose independent rect. 23 1
25 378.52 precipitation 0.1 30 > th dose independent rect. 23 1
28 378.52 precipitation 0.1 30 > th dose dependent rect. 23 1
70 385.65 humidity 60.0 90 < th dose dependent rect. 9 1
89 386.54 humidity 60.0 90 < th dose independent rect. 9 1
109 387.60 humidity 80.0 1440 > th dose independent rect. 2 1
111 387.77 humidity 80.0 720 < th dose independent rect. 2 2
113 387.78 humidity 80.0 720 < th dose dependent rect. 2 2
121 388.27 atmosphere 1005.0 270 < th dose independent rect. 5 4
131 388.97 atmosphere 1005.0 270 < th dose independent rect. 7 1
138 389.14 humidity 80.0 1440 > th dose independent rect. 24 4
140 389.22 wind 3.0 10 > th dose dependent rect. 3 1
144 389.34 humidity 80.0 720 > th dose independent rect. 24 6
153 390.05 precipitation 0.1 720 > th dose independent rect. 22 1
154 390.05 precipitation 0.1 720 > th dose dependent rect. 22 1
160 390.35 wind 7.0 10 > th dose dependent rect. 12 1
215 392.01 temperature 20.0 90 < th dose dependent rect. 2 1
222 392.25 atmosphere 1005.0 270 > th dose independent rect. 1 12
232 392.51 humidity 70.0 720 > th dose dependent rect. 24 5
234 392.57 wind 5.0 1440 < th dose independent rect. 22 1
256 393.07 atmosphere 1010.0 30 < th dose independent rect. 9 1
261 393.19 wind 5.0 10 > th dose dependent rect. 22 8
264 393.22 wind 5.0 1440 < th dose independent rect. 18 6
266 393.22 wind 5.0 10 > th dose dependent rect. 22 6
275 393.28 wind 5.0 10 > th dose independent rect. 22 8
277 393.29 atmosphere 1005.0 720 > th dose independent rect. 1 5
279 393.30 humidity 50.0 1440 > th dose dependent rect. 1 2
280 393.31 wind 5.0 1440 > th dose independent rect. 18 6
302 393.42 humidity 80.0 10 > th dose dependent rect. 24 17
305 393.47 wind 5.0 10 > th dose independent rect. 22 3
313 393.51 precipitation 0.1 270 > th dose independent rect. 20 4
314 393.51 precipitation 0.1 270 > th dose dependent rect. 20 4
352 393.84 atmosphere 1015.0 270 < th dose dependent rect. 5 5
359 393.93 humidity 80.0 90 < th dose independent rect. 2 9
378 394.12 radiation 1.0 90 < th dose independent rect. 14 1
379 394.12 radiation 1.0 90 < th dose dependent rect. 14 1
383 394.20 wind 5.0 720 < th dose independent rect. 18 11
392 394.30 atmosphere 1015.0 90 < th dose dependent rect. 7 4
394 394.34 humidity 90.0 270 < th dose independent rect. 7 1
405 394.40 humidity 90.0 10 < th dose independent rect. 23 12
427 394.49 temperature 20.0 90 < th dose dependent rect. 12 4
433 394.53 temperature 20.0 10 < th dose dependent rect. 12 5
463 394.71 humidity 80.0 30 < th dose independent rect. 3 7
495 394.88 wind 3.0 1440 > th dose dependent rect. 18 6
503 394.91 wind 3.0 1440 > th dose dependent rect. 18 2
511 394.96 temperature 20.0 90 < th dose independent rect. 14 2
515 394.97 temperature 20.0 90 < th dose dependent rect. 14 2
525 395.03 atmosphere 1015.0 10 < th dose dependent rect. 8 2
529 395.05 wind 7.0 10 > th dose independent rect. 12 1
531 395.06 humidity 90.0 30 < th dose dependent rect. 22 12
535 395.12 temperature 20.0 10 < th dose independent rect. 15 1
552 395.17 atmosphere 1015.0 90 < th dose dependent rect. 8 1
571 395.28 wind 3.0 90 > th dose independent rect. 22 12
643 395.52 wind 9.0 720 < th dose dependent rect. 18 10
647 395.56 humidity 80.0 10 > th dose independent rect. 24 17
653 395.59 atmosphere 1005.0 720 < th dose independent rect. 22 8
661 395.62 wind 5.0 1440 > th dose independent rect. 18 2
703 395.79 wind 5.0 1440 < th dose independent rect. 18 2
714 395.82 humidity 80.0 10 > th dose dependent rect. 24 10
736 395.88 humidity 90.0 30 > th dose independent rect. 24 10
741 395.89 humidity 90.0 90 < th dose dependent rect. 2 9
744 395.93 humidity 80.0 10 > th dose independent rect. 24 8
776 396.05 temperature 10.0 90 > th dose dependent rect. 22 13
782 396.08 wind 1.0 10 < th dose independent rect. 23 1
789 396.08 wind 1.0 10 < th dose dependent rect. 23 1
796 396.09 humidity 60.0 10 > th dose dependent sin 7 NA
821 396.17 atmosphere 1005.0 270 > th dose independent sin 5 NA
929 396.47 temperature 20.0 90 < th dose independent rect. 2 1
931 396.48 temperature 15.0 270 > th dose independent rect. 13 11
953 396.54 temperature 20.0 90 < th dose independent rect. 12 4
965 396.59 wind 3.0 10 > th dose independent rect. 3 1
1000 396.68 wind 1.0 1440 > th dose dependent rect. 15 13