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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0530000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione S-transferase GST 40 (EC 2.5.1.18).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0258) R2 : 0.755
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.04 (0.0544) R2dN8 : 0.974 R2N8 : 0.755
σ : 0.486
deviance : 108.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.78 0.46 2.94 0.11 0.249 0.979 -0.527 1.94 2.05 18 4.918 10 -- --
97.92 0.461 2.91 0.151 0.189 0.719 -0.395 -- 2.09 18.4 4.342 10 -- --
96.37 0.457 2.94 0.115 0.245 0.988 -- 1.73 2.04 18.4 4.9 10 -- --
97.81 0.461 2.92 0.106 0.225 0.622 -- -- 2.06 18.7 4.022 10 -- --
99.07 0.464 2.93 0.14 -- 1.09 -- 1.66 2.05 -- 4.642 10 -- --
101.51 0.472 2.92 -0.00404 0.348 -- -0.624 -- 2.05 17.5 -- -- -- --
102.47 0.474 2.92 -0.00224 0.344 -- -- -- 2.04 17.6 -- -- -- --
99.27 0.464 2.91 0.147 -- 0.617 -- -- 2.07 -- 2 12 -- --
98.08 0.461 2.92 -- 0.23 0.587 -- -- 2.05 18.7 4.042 10 -- --
108.62 0.487 2.92 -0.0134 -- -- -- -- 2.03 -- -- -- -- --
102.47 0.474 2.92 -- 0.344 -- -- -- 2.04 17.6 -- -- -- --
99.78 0.465 2.91 -- -- 0.58 -- -- 2.04 -- 2 12 -- --
108.62 0.486 2.92 -- -- -- -- -- 2.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.27 temperature 30.0 720 > th dose independent rect. 13 1
2 85.07 radiation 10.0 270 > th dose independent rect. 16 2
16 86.26 temperature 25.0 30 > th dose dependent rect. 16 9
18 86.29 temperature 25.0 30 > th dose dependent rect. 16 12
28 87.35 atmosphere 1005.0 30 > th dose dependent rect. 16 1
29 87.38 atmosphere 1005.0 30 > th dose independent rect. 16 1
30 87.45 temperature 25.0 30 > th dose dependent rect. 16 7
31 87.46 temperature 30.0 30 < th dose independent rect. 16 1
32 87.48 humidity 60.0 30 > th dose independent rect. 16 1
35 87.60 humidity 50.0 30 > th dose dependent rect. 16 1
38 87.74 wind 5.0 30 > th dose dependent rect. 16 1
40 87.78 temperature 25.0 30 > th dose dependent rect. 16 3
41 87.79 radiation 10.0 270 > th dose dependent rect. 16 2
55 87.82 radiation 10.0 10 < th dose independent rect. 16 1
57 87.85 wind 7.0 30 > th dose independent rect. 16 1
58 87.86 temperature 30.0 720 > th dose independent rect. 11 3
64 88.08 temperature 25.0 30 > th dose dependent rect. 16 5
67 88.09 temperature 30.0 30 < th dose dependent rect. 16 1
69 88.11 atmosphere 1005.0 30 > th dose dependent rect. 16 3
86 88.56 radiation 20.0 10 < th dose dependent rect. 16 1
94 88.73 radiation 1.0 30 > th dose independent rect. 16 1
95 88.74 temperature 25.0 30 > th dose independent rect. 16 1
96 88.77 humidity 80.0 30 < th dose independent rect. 16 1
116 88.83 temperature 10.0 1440 > th dose independent rect. 17 1
120 88.83 radiation 30.0 1440 < th dose independent rect. 17 1
126 88.83 temperature 10.0 1440 > th dose independent rect. 18 23
145 88.88 atmosphere 995.0 30 > th dose independent rect. 17 23
148 88.89 wind 9.0 30 < th dose independent rect. 16 1
149 88.89 temperature 10.0 30 > th dose independent rect. 16 1
151 88.89 atmosphere 995.0 30 > th dose independent rect. 16 1
153 88.89 atmosphere 1010.0 30 < th dose independent rect. 16 1
156 88.89 precipitation 0.1 30 < th dose independent rect. 16 1
157 88.89 temperature 10.0 30 > th dose independent rect. 17 23
158 88.89 precipitation 0.1 30 < th dose dependent rect. 16 1
162 88.94 precipitation 0.1 30 < th dose independent rect. 17 23
163 88.94 temperature 25.0 30 > th dose dependent rect. 16 1
164 88.94 precipitation 0.1 30 < th dose dependent rect. 17 23
167 88.95 temperature 10.0 30 > th dose dependent rect. 16 1
202 89.04 temperature 25.0 10 > th dose independent rect. 16 3
205 89.11 humidity 90.0 30 < th dose dependent rect. 16 1
206 89.13 radiation 30.0 270 > th dose independent rect. 14 18
207 89.18 atmosphere 1015.0 30 < th dose dependent rect. 16 1
211 89.22 wind 9.0 30 < th dose dependent rect. 16 1
256 89.81 atmosphere 1005.0 30 > th dose dependent rect. 14 5
257 89.82 radiation 30.0 270 > th dose independent rect. 14 2
273 89.86 atmosphere 1005.0 270 > th dose dependent rect. 16 1
280 90.06 temperature 25.0 270 > th dose independent rect. 23 10
311 90.14 temperature 20.0 720 > th dose dependent rect. 1 2
315 90.28 wind 9.0 30 < th dose independent rect. 17 23
349 90.95 atmosphere 1005.0 270 > th dose independent rect. 16 1
357 91.12 atmosphere 1005.0 10 > th dose dependent rect. 14 7
359 91.14 temperature 25.0 30 > th dose independent rect. 16 9
373 91.32 temperature 25.0 270 < th dose independent rect. 23 11
395 91.55 humidity 50.0 30 > th dose independent rect. 17 23
452 91.94 temperature 25.0 270 > th dose dependent rect. 13 10
457 92.00 temperature 20.0 270 > th dose dependent rect. 23 12
463 92.07 temperature 30.0 720 < th dose independent rect. 6 8
465 92.13 radiation 20.0 270 > th dose independent sin 14 NA
468 92.23 temperature 30.0 30 < th dose independent rect. 17 23
476 92.35 atmosphere 1005.0 30 > th dose independent rect. 16 3
482 92.46 temperature 25.0 270 > th dose dependent rect. 13 6
489 92.50 temperature 25.0 90 > th dose dependent sin 14 NA
515 92.61 temperature 25.0 270 < th dose independent sin 8 NA
536 92.82 temperature 25.0 10 > th dose independent rect. 16 7
538 92.83 wind 5.0 10 > th dose independent rect. 8 9
539 92.84 wind 5.0 10 > th dose dependent rect. 16 20
543 92.86 wind 5.0 10 > th dose independent rect. 5 12
553 92.91 temperature 10.0 30 > th dose dependent rect. 17 23
611 93.09 radiation 20.0 270 > th dose dependent rect. 14 18
612 93.10 atmosphere 995.0 1440 > th dose independent rect. 17 1
622 93.20 temperature 25.0 270 > th dose dependent rect. 24 8
627 93.22 wind 9.0 4320 > th dose dependent rect. 13 1
641 93.29 temperature 25.0 270 < th dose dependent rect. 23 10
645 93.31 temperature 25.0 270 > th dose independent sin 8 NA
659 93.34 radiation 10.0 270 > th dose dependent rect. 14 3
682 93.37 humidity 70.0 30 < th dose independent rect. 16 4
733 93.60 temperature 25.0 90 < th dose independent rect. 3 9
735 93.60 wind 5.0 10 > th dose dependent rect. 5 12
737 93.61 wind 5.0 10 > th dose dependent rect. 7 10
740 93.62 temperature 20.0 270 > th dose dependent sin 8 NA
743 93.63 wind 5.0 10 < th dose independent rect. 8 10
745 93.63 wind 5.0 10 > th dose dependent rect. 9 8
751 93.66 wind 5.0 10 > th dose dependent rect. 16 23
753 93.67 temperature 25.0 30 > th dose independent rect. 14 12
802 93.75 wind 5.0 10 > th dose dependent rect. 11 6
803 93.75 temperature 10.0 10 > th dose dependent rect. 2 14
804 93.76 wind 9.0 4320 > th dose independent rect. 13 1
805 93.76 temperature 25.0 90 > th dose independent rect. 1 3
835 93.79 temperature 25.0 90 > th dose dependent rect. 2 2
836 93.79 radiation 30.0 270 < th dose dependent rect. 13 14
875 93.92 wind 5.0 10 > th dose dependent rect. 16 3
886 93.97 wind 5.0 10 > th dose independent rect. 16 20
897 94.02 atmosphere 1005.0 30 > th dose independent rect. 14 5
907 94.08 wind 5.0 10 > th dose independent rect. 16 23
913 94.09 wind 9.0 4320 < th dose independent rect. 13 1
963 94.19 radiation 40.0 720 > th dose independent rect. 11 4
996 94.21 temperature 25.0 720 > th dose dependent rect. 7 8