Os10g0529500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutathione-S-transferase 2.
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Os10g0529500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutathione-S-transferase 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 295.26 | 0.807 | 7.39 | -1.39 | 0.649 | -4.17 | -0.245 | -5.71 | 0.19 | 5.76 | 1.003 | 10081 | 7.11 | -- |
| 338.39 | 0.857 | 7.32 | 0.0929 | 0.161 | -4.03 | 0.225 | -- | 0.482 | 5.77 | 1.369 | 9468 | 6.55 | -- |
| 294.54 | 0.799 | 7.38 | -1.17 | 0.651 | -4.22 | -- | -5.24 | 0.251 | 5.75 | 1 | 10080 | 6.19 | -- |
| 302.83 | 0.81 | 7.32 | 0.215 | 0.304 | -4.29 | -- | -- | 0.646 | 5.42 | 1.317 | 15190 | 6.25 | -- |
| 298.93 | 0.805 | 7.41 | -1 | -- | -4.51 | -- | -5.07 | 0.183 | -- | 0.9969 | 10837 | 6.35 | -- |
| 789.7 | 1.32 | 7.56 | -0.0922 | 0.566 | -- | -0.305 | -- | -0.582 | 6.59 | -- | -- | -- | -- |
| 789.89 | 1.32 | 7.55 | -0.0957 | 0.564 | -- | -- | -- | -0.58 | 6.77 | -- | -- | -- | -- |
| 299.23 | 0.806 | 7.26 | 0.81 | -- | -4.46 | -- | -- | 0.726 | -- | 1.25 | 15184 | 5.75 | -- |
| 307.08 | 0.816 | 7.3 | -- | 0.328 | -4.17 | -- | -- | 0.568 | 4.68 | 1.32 | 15180 | 6.5 | -- |
| 806.53 | 1.33 | 7.57 | -0.0831 | -- | -- | -- | -- | -0.569 | -- | -- | -- | -- | -- |
| 790.13 | 1.31 | 7.55 | -- | 0.563 | -- | -- | -- | -0.57 | 6.78 | -- | -- | -- | -- |
| 311.85 | 0.822 | 7.28 | -- | -- | -4.25 | -- | -- | 0.581 | -- | 1.24 | 15167 | 6.27 | -- |
| 806.71 | 1.33 | 7.56 | -- | -- | -- | -- | -- | -0.56 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 280.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 2 | 280.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 5 | 284.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 10 | 285.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 17 | 286.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 24 | 286.76 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 34 | 286.92 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 39 | 287.43 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 44 | 287.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 62 | 288.45 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 67 | 288.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 84 | 289.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 86 | 289.61 | radiation | 1 | 14400 | < th | dose dependent | sin | 13 | NA |
| 89 | 289.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 90 | 289.65 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 93 | 289.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 108 | 289.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 113 | 289.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 132 | 290.18 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 147 | 290.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 156 | 290.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 165 | 290.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 171 | 290.32 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 220 | 290.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 257 | 290.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 280 | 291.16 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 21 |
| 297 | 291.43 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 355 | 291.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 358 | 291.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 18 |
| 472 | 292.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 485 | 292.88 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 498 | 293.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 528 | 293.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 532 | 293.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 540 | 293.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 547 | 293.90 | radiation | 1 | 14400 | < th | dose independent | sin | 23 | NA |
| 595 | 294.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 602 | 294.68 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 13 |
| 661 | 295.02 | radiation | 1 | 14400 | > th | dose independent | sin | 23 | NA |
| 777 | 296.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 900 | 297.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 905 | 297.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 913 | 297.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 19 |
| 917 | 297.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 960 | 298.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 961 | 298.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 976 | 298.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 979 | 298.81 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 5 |