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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0527900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0257) R2 : 0.0785
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.337 (0.0541) R2dN8 : 0.101 R2N8 : 0.0785
σ : 0.484
deviance : 107.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.83 0.45 3.84 1.78 0.139 -24.4 -0.675 -50.6 0.367 0.778 15.02 4508 -- --
98.8 0.466 2.97 -0.458 0.149 0.0755 -0.77 -- 0.283 0.669 15.02 4508 -- --
93.7 0.451 3.83 1.79 0.143 -24.3 -- -50.5 0.376 1.63 15.04 4635 -- --
96 0.456 2.94 -0.131 0.155 -0.508 -- -- 0.384 0.661 14.9 13228 -- --
94.95 0.454 3.85 1.85 -- -25 -- -51.8 0.368 -- 15.04 4631 -- --
98.81 0.466 2.97 -0.454 0.147 -- -0.761 -- 0.284 0.676 -- -- -- --
101.2 0.471 2.97 -0.427 0.155 -- -- -- 0.287 1.59 -- -- -- --
97.25 0.459 2.93 -0.0409 -- -0.551 -- -- 0.408 -- 15.3 14530 -- --
95.74 0.456 2.94 -- 0.157 -0.64 -- -- 0.402 0.507 15.6 14567 -- --
102.67 0.473 2.97 -0.42 -- -- -- -- 0.29 -- -- -- -- --
106 0.482 2.96 -- 0.147 -- -- -- 0.335 1.5 -- -- -- --
97.09 0.459 2.94 -- -- -0.639 -- -- 0.408 -- 15.6 14567 -- --
107.33 0.484 2.96 -- -- -- -- -- 0.337 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.15 humidity 60.0 43200 < th dose independent rect. 22 4
3 90.30 humidity 70.0 43200 < th dose dependent rect. 23 3
6 90.32 humidity 70.0 43200 < th dose dependent rect. 22 6
10 90.42 humidity 60.0 43200 > th dose independent rect. 23 3
11 90.42 humidity 60.0 43200 > th dose independent rect. 22 6
18 90.49 humidity 70.0 43200 < th dose independent rect. 24 2
65 90.83 atmosphere 1000.0 90 < th dose dependent rect. 8 6
91 91.04 temperature 20.0 4320 < th dose dependent rect. 16 3
125 91.29 temperature 20.0 4320 < th dose dependent rect. 16 1
141 91.39 humidity 50.0 43200 > th dose independent rect. 19 13
146 91.43 humidity 50.0 43200 > th dose independent rect. 2 6
150 91.44 humidity 50.0 43200 < th dose independent rect. 5 3
162 91.49 humidity 50.0 43200 < th dose independent rect. 3 5
175 91.56 humidity 50.0 43200 > th dose independent rect. 6 2
177 91.57 temperature 15.0 4320 > th dose independent rect. 17 1
182 91.60 atmosphere 1005.0 30 > th dose independent rect. 22 1
184 91.61 temperature 15.0 4320 > th dose independent rect. 15 10
191 91.65 precipitation 0.1 30 < th dose independent rect. 22 1
195 91.65 precipitation 0.1 30 < th dose dependent rect. 22 1
205 91.70 wind 5.0 30 < th dose independent rect. 22 1
208 91.70 temperature 10.0 30 > th dose independent rect. 22 1
210 91.70 temperature 30.0 30 < th dose independent rect. 22 1
211 91.70 humidity 50.0 30 > th dose independent rect. 22 1
214 91.70 atmosphere 995.0 30 > th dose independent rect. 22 1
215 91.70 atmosphere 1010.0 30 < th dose independent rect. 22 1
217 91.70 radiation 1.0 30 < th dose independent rect. 22 1
222 91.70 temperature 15.0 4320 > th dose independent rect. 15 5
224 91.70 temperature 10.0 30 > th dose independent rect. 23 23
225 91.70 atmosphere 995.0 30 > th dose dependent rect. 22 1
226 91.70 radiation 1.0 30 < th dose dependent rect. 22 1
231 91.71 temperature 20.0 1440 < th dose independent rect. 16 1
235 91.72 temperature 15.0 4320 > th dose independent sin 17 NA
238 91.72 wind 9.0 30 < th dose dependent rect. 22 1
240 91.72 humidity 50.0 30 > th dose dependent rect. 22 1
243 91.73 atmosphere 1005.0 14400 < th dose independent rect. 16 6
247 91.74 wind 1.0 30 > th dose independent rect. 22 1
248 91.74 temperature 15.0 4320 < th dose independent rect. 17 9
253 91.75 temperature 15.0 4320 > th dose independent rect. 13 13
259 91.78 temperature 10.0 30 > th dose dependent rect. 22 1
260 91.78 temperature 30.0 30 < th dose dependent rect. 22 1
270 91.79 temperature 15.0 4320 > th dose independent rect. 15 16
271 91.79 temperature 15.0 4320 > th dose independent rect. 15 18
275 91.80 atmosphere 1005.0 14400 < th dose independent rect. 17 3
283 91.81 humidity 90.0 30 < th dose independent rect. 22 1
292 91.82 temperature 15.0 4320 > th dose independent rect. 13 20
293 91.83 temperature 15.0 4320 < th dose independent sin 16 NA
301 91.83 temperature 15.0 4320 > th dose independent rect. 13 18
304 91.83 atmosphere 1015.0 30 < th dose dependent rect. 22 1
307 91.84 atmosphere 1005.0 14400 > th dose independent rect. 17 3
324 91.85 temperature 15.0 4320 > th dose independent rect. 13 16
333 91.86 atmosphere 1005.0 14400 > th dose independent rect. 17 1
344 91.87 temperature 15.0 4320 < th dose independent rect. 6 20
346 91.87 humidity 50.0 43200 < th dose dependent rect. 7 1
347 91.87 humidity 50.0 43200 < th dose dependent rect. 3 6
363 91.88 wind 1.0 30 > th dose dependent rect. 22 1
366 91.89 temperature 20.0 4320 > th dose independent rect. 13 1
370 91.89 atmosphere 1005.0 14400 > th dose independent rect. 16 6
380 91.89 atmosphere 1000.0 270 < th dose dependent rect. 9 1
399 91.90 temperature 10.0 43200 < th dose dependent rect. 2 1
401 91.91 temperature 25.0 30 > th dose independent rect. 22 1
431 91.92 temperature 15.0 4320 > th dose independent rect. 16 22
434 91.93 wind 9.0 1440 < th dose independent rect. 23 1
435 91.93 temperature 10.0 1440 > th dose independent rect. 23 1
438 91.93 temperature 30.0 1440 < th dose independent rect. 23 1
442 91.93 humidity 50.0 1440 > th dose independent rect. 23 1
452 91.93 atmosphere 995.0 1440 > th dose independent rect. 23 1
453 91.93 radiation 1.0 1440 < th dose independent rect. 23 1
476 91.93 temperature 10.0 1440 > th dose independent rect. 24 23
479 91.93 radiation 1.0 1440 < th dose dependent rect. 23 1
485 91.93 humidity 50.0 43200 < th dose dependent rect. 6 3
497 91.94 temperature 15.0 4320 > th dose independent rect. 4 22
514 91.95 temperature 15.0 4320 > th dose independent rect. 6 20
529 91.96 temperature 15.0 4320 > th dose independent rect. 6 23
530 91.96 humidity 90.0 30 < th dose dependent rect. 22 1
571 91.98 temperature 15.0 4320 > th dose independent rect. 8 23
583 91.99 temperature 15.0 4320 > th dose independent rect. 8 18
605 92.00 temperature 15.0 4320 > th dose independent no NA NA
620 92.00 temperature 15.0 4320 > th dose independent rect. 8 21
635 92.01 temperature 15.0 4320 > th dose independent rect. 21 23
713 92.05 temperature 15.0 4320 < th dose independent no NA NA
732 92.05 temperature 15.0 4320 < th dose independent rect. 23 23
765 92.07 temperature 15.0 4320 < th dose independent rect. 21 23
776 92.08 temperature 15.0 4320 > th dose independent rect. 19 23
834 92.14 atmosphere 1005.0 14400 < th dose independent rect. 21 1
860 92.15 temperature 15.0 4320 < th dose dependent rect. 17 9
886 92.17 temperature 15.0 4320 < th dose dependent sin 19 NA
923 92.19 atmosphere 1000.0 30 < th dose dependent rect. 9 1