FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0527400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tau class GST protein 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.09 (0.0587) R2 : 0.257
β1 : 1.24 (0.26) R2dD : 0.0587 R2D : -0.0979
β2 : 1.05 (0.136) R2dC : 0.0982 R2C : 0.0677
β3 : 3.11 (0.301) R2dE : 0.29 R2E : 0.0702
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.575 (0.136) R2dN8 : 0.0486 R2N8 : -0.0362
σ : 1.07
deviance : 527.34
__
_____
C
peak time of C : 23.2
E
wheather : temperature
threshold : 18.62
memory length : 3756
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
523.82 1.08 5.11 1.14 1.05 3.2 -1.01 0.672 0.569 23.2 18.8 3849 -- --
522.7 1.06 5.09 1.22 1.07 3.17 -1.08 -- 0.58 23.1 18.6 3782 -- --
526.22 1.07 5.12 1.16 1.06 3.38 -- 0.956 0.556 23.3 18.54 3788 -- --
527.34 1.07 5.09 1.24 1.05 3.11 -- -- 0.575 23.2 18.62 3756 -- --
590.03 1.13 5.11 1.27 -- 3.15 -- 0.859 0.586 -- 18.59 4408 -- --
645.8 1.19 5.23 -0.395 0.954 -- -0.959 -- -0.0333 22.8 -- -- -- --
649.6 1.19 5.23 -0.358 0.958 -- -- -- -0.0311 23 -- -- -- --
590.32 1.13 5.06 1.32 -- 2.89 -- -- 0.599 -- 18.58 4435 -- --
556.67 1.1 5.17 -- 0.876 2.43 -- -- 0.396 23 18.62 3731 -- --
706.62 1.24 5.2 -0.337 -- -- -- -- -0.0241 -- -- -- -- --
652.97 1.2 5.22 -- 0.955 -- -- -- 0.00876 22.9 -- -- -- --
616.42 1.16 5.13 -- -- 2.17 -- -- 0.307 -- 18.63 2882 -- --
709.61 1.24 5.2 -- -- -- -- -- 0.0132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 508.69 wind 1 14400 > th dose independent rect. 22 4
3 509.70 radiation 30 43200 < th dose independent rect. 20 13
4 509.73 radiation 30 43200 < th dose independent rect. 3 6
5 509.73 radiation 30 43200 < th dose independent rect. 1 8
6 509.73 radiation 30 43200 < th dose independent rect. 23 10
34 511.07 radiation 30 43200 < th dose independent sin 10 NA
35 511.27 wind 1 14400 > th dose independent rect. 24 1
52 511.62 wind 3 43200 < th dose dependent rect. 10 2
54 511.66 wind 1 43200 > th dose independent rect. 11 1
56 511.79 wind 3 43200 < th dose independent rect. 11 1
57 512.02 radiation 10 43200 < th dose independent rect. 17 15
74 512.47 wind 1 14400 < th dose independent rect. 22 4
78 512.61 temperature 20 14400 < th dose independent rect. 21 1
84 513.29 temperature 20 14400 > th dose independent rect. 21 1
91 513.97 radiation 10 43200 < th dose independent rect. 5 3
93 514.03 radiation 10 43200 < th dose independent rect. 20 12
108 514.72 wind 9 43200 > th dose independent rect. 8 12
128 515.08 wind 9 43200 > th dose independent rect. 8 9
142 515.42 humidity 80 43200 < th dose dependent rect. 10 1
144 515.50 wind 1 14400 < th dose independent rect. 24 1
157 515.58 wind 9 43200 > th dose independent sin 23 NA
179 515.72 wind 9 43200 > th dose independent rect. 11 22
180 515.73 wind 9 43200 > th dose independent rect. 13 19
187 515.86 wind 5 43200 < th dose dependent rect. 22 4
189 515.88 wind 9 43200 < th dose independent rect. 8 12
191 515.89 wind 9 43200 < th dose independent rect. 8 9
217 516.18 wind 7 43200 > th dose dependent rect. 8 11
229 516.46 wind 9 43200 < th dose independent rect. 13 20
261 516.63 wind 9 43200 < th dose independent sin 23 NA
280 516.80 wind 3 43200 > th dose independent rect. 9 5
293 516.90 wind 7 43200 > th dose dependent sin 22 NA
295 516.93 wind 9 43200 > th dose independent rect. 24 20
323 517.14 humidity 70 43200 < th dose independent rect. 1 12
324 517.14 wind 9 43200 < th dose independent rect. 5 15
327 517.15 humidity 50 43200 < th dose independent rect. 16 1
336 517.25 humidity 70 43200 > th dose independent rect. 4 8
345 517.31 radiation 10 43200 < th dose independent sin 11 NA
349 517.33 wind 7 43200 > th dose dependent rect. 5 14
355 517.40 humidity 70 43200 < th dose independent rect. 19 19
356 517.41 humidity 70 43200 > th dose independent rect. 1 12
361 517.45 wind 9 43200 < th dose independent rect. 24 19
387 517.64 radiation 1 43200 > th dose dependent rect. 4 2
407 517.77 wind 9 43200 > th dose independent rect. 8 15
425 517.82 atmosphere 1015 43200 < th dose independent rect. 18 6
432 517.84 atmosphere 1015 43200 < th dose independent rect. 20 1
452 517.95 humidity 50 43200 > th dose independent rect. 16 1
459 517.97 wind 9 43200 < th dose independent rect. 9 21
461 517.97 wind 7 43200 > th dose dependent rect. 12 21
466 518.01 atmosphere 1015 43200 > th dose independent rect. 21 1
468 518.01 atmosphere 1015 43200 > th dose independent rect. 19 5
478 518.05 humidity 70 43200 < th dose dependent rect. 12 1
515 518.16 humidity 70 43200 > th dose independent rect. 20 18
532 518.26 humidity 70 43200 < th dose independent rect. 4 8
569 518.43 humidity 70 43200 < th dose independent sin 5 NA
602 518.60 radiation 10 43200 < th dose independent rect. 17 1
649 518.85 humidity 70 43200 > th dose independent sin 5 NA
672 518.97 humidity 70 43200 > th dose independent rect. 16 21
687 519.07 wind 7 43200 > th dose dependent rect. 9 18
697 519.11 wind 9 43200 < th dose independent rect. 8 15
701 519.13 humidity 80 43200 < th dose dependent rect. 17 20
721 519.25 wind 3 43200 < th dose independent rect. 6 9
742 519.34 wind 3 43200 > th dose independent rect. 6 9
762 519.38 radiation 30 43200 > th dose dependent rect. 9 2
788 519.44 humidity 80 43200 < th dose dependent rect. 18 6
789 519.44 wind 7 43200 > th dose dependent rect. 9 16
801 519.47 humidity 80 43200 < th dose dependent rect. 17 18
814 519.50 humidity 80 43200 > th dose independent rect. 19 14
816 519.50 humidity 70 43200 < th dose independent rect. 16 21
841 519.62 humidity 80 43200 > th dose independent rect. 19 12
893 519.81 humidity 80 43200 > th dose independent rect. 19 10
905 519.84 wind 9 43200 < th dose dependent rect. 10 21
942 519.96 humidity 80 43200 < th dose dependent rect. 19 3
956 519.99 humidity 80 43200 < th dose dependent rect. 17 10
961 520.01 wind 1 43200 > th dose dependent rect. 11 20