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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0525800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione S-transferase GSTU31 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0389) R2 : 0.394
β1 : 0.419 (0.175) R2dD : 0.0109 R2D : -0.0745
β2 : 0.437 (0.0957) R2dC : 0.0278 R2C : 0.0279
β3 : 2.71 (0.207) R2dE : 0.407 R2E : 0.3
β4 : -2.41 (0.413) R2dD*C : 0.0492 R2D*C : 0.0514
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.21 (0.092) R2dN8 : 0.0111 R2N8 : -0.0335
σ : 0.701
deviance : 226.7
__
_____
C
peak time of C : 7.88
E
wheather : temperature
threshold : 22.36
memory length : 5144
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.63 0.704 3.47 0.55 0.439 1.98 -2.43 -2.21 0.267 8.02 23.77 5120 -- --
226.7 0.701 3.55 0.419 0.437 2.71 -2.41 -- 0.21 7.88 22.36 5144 -- --
242.18 0.725 3.48 0.475 0.448 2.05 -- -2.01 0.266 8.2 23.49 5110 -- --
244.56 0.728 3.55 0.3 0.439 2.67 -- -- 0.191 8.44 22.25 5107 -- --
252.85 0.741 3.48 0.498 -- 1.98 -- -2.25 0.277 -- 23.66 5111 -- --
308.46 0.823 3.68 -1 0.469 -- -2.35 -- -0.39 8.34 -- -- -- --
325.47 0.845 3.68 -1.07 0.471 -- -- -- -0.388 8.88 -- -- -- --
255.2 0.744 3.56 0.311 -- 2.68 -- -- 0.198 -- 22.26 5098 -- --
245.92 0.73 3.56 -- 0.44 2.41 -- -- 0.133 8.4 22.55 5098 -- --
338.14 0.859 3.69 -1.07 -- -- -- -- -0.384 -- -- -- -- --
355.81 0.882 3.65 -- 0.47 -- -- -- -0.268 9.06 -- -- -- --
256.67 0.746 3.57 -- -- 2.41 -- -- 0.145 -- 22.66 5096 -- --
368.5 0.896 3.66 -- -- -- -- -- -0.265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.62 radiation 1 14400 < th dose dependent rect. 6 1
2 214.73 wind 3 43200 < th dose independent rect. 10 2
4 215.28 wind 3 43200 > th dose independent rect. 10 2
5 215.28 wind 5 43200 < th dose dependent rect. 10 2
9 215.52 wind 1 43200 > th dose dependent rect. 9 3
10 215.55 temperature 20 43200 < th dose dependent rect. 11 1
11 215.59 wind 9 43200 < th dose dependent rect. 9 3
28 216.25 radiation 1 14400 < th dose independent rect. 18 18
29 216.27 temperature 20 43200 < th dose independent rect. 12 1
37 216.35 radiation 1 14400 < th dose independent rect. 18 15
38 216.36 radiation 1 14400 < th dose dependent rect. 5 7
50 216.53 temperature 20 43200 > th dose independent rect. 12 1
51 216.54 radiation 1 43200 > th dose independent rect. 11 1
61 216.61 radiation 1 43200 < th dose independent rect. 11 1
64 216.61 radiation 1 43200 < th dose dependent rect. 11 1
65 216.61 radiation 1 14400 < th dose dependent rect. 5 4
67 216.62 radiation 1 14400 < th dose dependent rect. 23 13
70 216.63 radiation 1 14400 < th dose dependent rect. 21 15
77 216.65 radiation 1 14400 < th dose dependent rect. 2 10
79 216.66 radiation 1 14400 > th dose independent rect. 18 18
84 216.68 radiation 1 14400 < th dose dependent sin 5 NA
93 216.81 radiation 1 14400 < th dose independent rect. 6 2
94 216.82 radiation 1 14400 > th dose independent rect. 6 2
96 216.82 radiation 1 14400 < th dose dependent rect. 5 11
99 216.85 radiation 1 14400 > th dose independent rect. 18 15
120 216.92 radiation 1 14400 < th dose dependent rect. 23 10
121 216.93 radiation 1 14400 < th dose dependent rect. 21 12
122 216.93 radiation 1 14400 < th dose dependent rect. 19 14
126 216.95 radiation 1 14400 < th dose dependent rect. 1 8
128 216.96 radiation 1 14400 < th dose dependent rect. 3 6
141 216.99 radiation 1 14400 < th dose independent sin 10 NA
157 217.02 radiation 1 14400 < th dose dependent rect. 23 17
161 217.03 radiation 1 14400 < th dose dependent rect. 19 21
162 217.04 radiation 1 14400 < th dose independent sin 5 NA
163 217.04 radiation 1 14400 < th dose dependent rect. 3 13
172 217.08 radiation 1 14400 < th dose independent rect. 5 7
180 217.10 temperature 20 43200 > th dose independent rect. 15 1
182 217.11 radiation 1 14400 > th dose independent sin 5 NA
183 217.11 radiation 1 14400 > th dose independent rect. 5 7
208 217.19 humidity 90 43200 > th dose independent rect. 11 1
216 217.22 radiation 1 14400 < th dose independent rect. 2 10
217 217.22 radiation 1 14400 < th dose independent rect. 23 13
222 217.23 radiation 1 14400 < th dose independent rect. 21 15
224 217.24 temperature 20 43200 > th dose independent rect. 12 4
229 217.25 temperature 20 43200 < th dose independent rect. 15 1
292 217.33 radiation 1 14400 > th dose independent sin 10 NA
293 217.33 temperature 20 43200 < th dose independent rect. 12 5
299 217.33 temperature 20 43200 < th dose dependent rect. 6 14
314 217.36 radiation 1 14400 < th dose independent rect. 5 4
356 217.41 temperature 20 43200 < th dose dependent rect. 19 1
374 217.45 radiation 1 14400 > th dose independent rect. 5 4
382 217.48 temperature 20 43200 > th dose independent rect. 14 3
399 217.51 radiation 1 14400 < th dose independent rect. 2 7
400 217.51 radiation 1 14400 < th dose independent rect. 23 10
403 217.52 radiation 1 14400 < th dose independent rect. 21 12
427 217.56 temperature 20 43200 < th dose dependent sin 22 NA
454 217.58 temperature 20 43200 < th dose independent rect. 14 3
493 217.63 humidity 90 43200 < th dose independent rect. 11 1
547 217.70 temperature 20 43200 < th dose independent rect. 14 6
557 217.72 temperature 15 43200 > th dose independent rect. 4 3
565 217.74 temperature 15 43200 > th dose independent rect. 4 6
566 217.74 temperature 20 43200 > th dose independent rect. 14 6
567 217.74 temperature 15 43200 > th dose independent rect. 4 8
573 217.75 radiation 1 14400 < th dose dependent rect. 15 21
587 217.77 humidity 90 43200 > th dose dependent rect. 10 3
658 217.86 temperature 20 43200 < th dose independent rect. 19 1
713 217.90 temperature 20 43200 > th dose independent rect. 19 1
738 217.93 temperature 15 43200 > th dose independent rect. 9 1
753 217.95 temperature 15 43200 > th dose independent rect. 24 10
902 218.12 wind 1 43200 > th dose independent rect. 24 2
911 218.13 temperature 15 43200 < th dose independent rect. 4 1
941 218.15 temperature 15 43200 > th dose independent sin 7 NA
957 218.16 wind 1 43200 > th dose dependent rect. 5 18
986 218.20 humidity 90 43200 > th dose independent rect. 10 3