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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0524500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Mandelonitrile lyase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0373) R2 : 0.471
β1 : 1.83 (0.137) R2dD : 0.216 R2D : 0.197
β2 : 1.24 (0.0914) R2dC : 0.216 R2C : 0.212
β3 : -- (--) R2dE : -- R2E : --
β4 : 2.64 (0.366) R2dD*C : 0.0612 R2D*C : 0.0322
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0458 (0.0796) R2dN8 : 0.000516 R2N8 : 0.00267
σ : 0.702
deviance : 224.03
__
_____
C
peak time of C : 21.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.41 0.677 3.94 3.85 1.23 -1.83 2.21 19.6 0.0829 21.5 29.24 777 -- --
221.92 0.694 4.17 2 1.25 -0.348 2.66 -- 0.0466 21.5 13.16 7540 -- --
223.14 0.696 3.91 4.01 1.25 -1.84 -- 20.5 0.191 21.4 28.66 779 -- --
247.59 0.733 4.16 1.97 1.24 -0.394 -- -- 0.0772 21.6 12.92 9444 -- --
299.91 0.807 3.9 3.6 -- -1.25 -- 20.6 0.106 -- 29.46 745 -- --
224.03 0.702 4.19 1.83 1.24 -- 2.64 -- -0.0458 21.5 -- -- -- --
249.66 0.74 4.19 1.73 1.23 -- -- -- -0.05 21.5 -- -- -- --
329.4 0.849 4.13 1.88 -- -0.803 -- -- 0.0538 -- 12.92 9444 -- --
274.62 0.772 4.32 -- 1.22 1.07 -- -- -0.599 21.6 18.94 47520 -- --
338.71 0.86 4.16 1.74 -- -- -- -- -0.0532 -- -- -- -- --
328.35 0.848 4.23 -- 1.23 -- -- -- -0.242 21.6 -- -- -- --
360.76 0.885 4.29 -- -- 1.13 -- -- -0.648 -- 19.13 47520 -- --
418.28 0.955 4.2 -- -- -- -- -- -0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.94 atmosphere 1000.0 270 < th dose independent rect. 13 15
2 204.01 atmosphere 1000.0 270 < th dose independent rect. 15 13
5 204.06 temperature 25.0 90 > th dose dependent rect. 1 4
7 204.56 wind 1.0 14400 < th dose dependent rect. 2 1
8 204.71 atmosphere 1000.0 720 < th dose independent rect. 17 1
13 204.98 humidity 90.0 14400 > th dose dependent rect. 5 1
19 205.38 wind 1.0 14400 > th dose independent rect. 2 1
23 205.67 wind 1.0 14400 < th dose independent rect. 2 1
24 205.70 atmosphere 1000.0 270 < th dose independent sin 15 NA
28 205.85 temperature 25.0 90 > th dose independent rect. 1 3
30 206.01 atmosphere 1005.0 14400 < th dose independent rect. 13 1
31 206.04 atmosphere 1000.0 720 < th dose dependent rect. 17 1
33 206.07 temperature 25.0 270 > th dose dependent rect. 1 1
37 206.15 radiation 1.0 14400 < th dose dependent rect. 23 6
40 206.32 atmosphere 1000.0 90 < th dose dependent rect. 17 11
42 206.36 radiation 1.0 14400 < th dose dependent rect. 19 10
53 206.53 atmosphere 1000.0 30 > th dose independent rect. 3 23
60 206.66 atmosphere 1005.0 14400 > th dose independent rect. 13 1
68 206.82 atmosphere 1000.0 270 > th dose independent sin 17 NA
70 206.85 radiation 20.0 1440 < th dose independent rect. 11 1
74 206.88 wind 3.0 43200 > th dose independent rect. 19 1
76 206.88 atmosphere 1000.0 30 < th dose dependent rect. 16 13
77 206.89 radiation 40.0 43200 < th dose dependent rect. 24 5
78 206.93 wind 3.0 43200 < th dose independent rect. 19 1
88 207.10 wind 1.0 43200 > th dose independent rect. 9 2
95 207.14 radiation 20.0 14400 < th dose dependent rect. 24 5
98 207.26 atmosphere 1000.0 10 < th dose independent rect. 14 15
106 207.32 atmosphere 1000.0 90 < th dose dependent rect. 19 9
111 207.35 atmosphere 1005.0 14400 > th dose independent rect. 11 5
133 207.58 atmosphere 995.0 43200 < th dose independent rect. 22 17
145 207.66 atmosphere 1000.0 90 < th dose dependent rect. 13 15
149 207.68 atmosphere 1000.0 270 > th dose independent rect. 17 15
155 207.72 wind 1.0 14400 < th dose dependent rect. 21 5
157 207.74 atmosphere 1005.0 14400 < th dose independent rect. 11 12
158 207.74 wind 1.0 43200 < th dose dependent rect. 11 1
162 207.75 wind 3.0 43200 < th dose dependent rect. 18 6
167 207.77 wind 3.0 43200 < th dose dependent rect. 19 2
180 207.86 atmosphere 1005.0 14400 > th dose independent rect. 15 1
185 207.87 precipitation 0.1 43200 > th dose dependent rect. 17 5
186 207.88 humidity 90.0 14400 > th dose independent rect. 23 1
190 207.89 atmosphere 1010.0 43200 < th dose dependent rect. 23 1
193 207.91 atmosphere 995.0 43200 < th dose dependent rect. 12 21
205 207.97 atmosphere 1000.0 30 < th dose dependent sin 13 NA
212 208.00 humidity 90.0 14400 < th dose independent rect. 23 2
215 208.00 precipitation 0.1 43200 > th dose dependent rect. 15 4
226 208.03 radiation 40.0 43200 < th dose dependent rect. 2 3
250 208.10 atmosphere 995.0 43200 < th dose dependent rect. 11 17
251 208.11 atmosphere 995.0 43200 > th dose independent sin 6 NA
264 208.14 atmosphere 995.0 43200 < th dose independent sin 6 NA
281 208.17 atmosphere 1005.0 14400 > th dose independent rect. 11 11
317 208.24 atmosphere 995.0 720 > th dose independent rect. 5 17
352 208.34 wind 3.0 43200 > th dose independent rect. 13 1
353 208.34 wind 1.0 43200 < th dose independent rect. 9 2
354 208.34 wind 7.0 43200 > th dose independent rect. 18 12
360 208.35 wind 3.0 43200 < th dose independent rect. 13 1
361 208.35 wind 7.0 43200 < th dose independent rect. 18 12
366 208.37 atmosphere 1005.0 14400 < th dose independent rect. 15 1
367 208.37 precipitation 0.1 43200 > th dose independent rect. 16 2
395 208.42 radiation 20.0 43200 > th dose independent rect. 13 1
398 208.42 atmosphere 995.0 43200 > th dose independent rect. 1 12
411 208.46 atmosphere 1005.0 14400 < th dose independent sin 19 NA
416 208.47 precipitation 0.1 43200 < th dose independent rect. 17 2
421 208.47 precipitation 0.1 43200 < th dose dependent rect. 17 2
432 208.50 atmosphere 995.0 43200 > th dose independent rect. 18 20
444 208.51 radiation 10.0 4320 > th dose dependent rect. 16 16
460 208.54 precipitation 0.1 43200 > th dose independent rect. 16 4
461 208.54 precipitation 0.1 43200 < th dose independent rect. 16 4
466 208.54 precipitation 0.1 43200 < th dose dependent rect. 16 4
502 208.62 radiation 20.0 43200 < th dose dependent rect. 13 1
518 208.64 radiation 20.0 720 > th dose dependent rect. 16 1
587 208.74 atmosphere 1005.0 14400 > th dose independent sin 20 NA
588 208.74 temperature 20.0 4320 > th dose independent rect. 21 1
603 208.77 radiation 1.0 14400 < th dose dependent rect. 3 2
607 208.78 atmosphere 995.0 720 > th dose independent rect. 10 7
643 208.83 wind 1.0 43200 < th dose dependent rect. 10 16
665 208.86 radiation 20.0 43200 < th dose dependent rect. 19 10
678 208.88 atmosphere 1000.0 720 < th dose dependent rect. 12 8
688 208.90 atmosphere 995.0 43200 < th dose dependent rect. 18 23
695 208.91 atmosphere 995.0 43200 < th dose dependent rect. 21 20
700 208.92 atmosphere 995.0 43200 < th dose dependent no NA NA
730 208.95 radiation 30.0 4320 < th dose independent rect. 16 16
735 208.96 radiation 40.0 43200 > th dose independent rect. 13 1
779 209.02 atmosphere 1005.0 14400 > th dose independent rect. 15 8
850 209.09 atmosphere 1005.0 14400 < th dose independent rect. 21 1
857 209.10 wind 7.0 43200 > th dose dependent rect. 18 12
858 209.10 wind 5.0 43200 > th dose dependent rect. 17 16
886 209.14 atmosphere 995.0 720 > th dose independent rect. 9 23
906 209.16 precipitation 0.1 43200 > th dose dependent rect. 16 1
913 209.17 radiation 10.0 1440 < th dose independent rect. 16 1
916 209.17 radiation 20.0 1440 < th dose independent rect. 15 22
934 209.20 humidity 90.0 43200 > th dose independent rect. 10 1
946 209.21 atmosphere 995.0 43200 < th dose dependent sin 17 NA
955 209.23 atmosphere 1000.0 720 < th dose dependent sin 19 NA
961 209.24 radiation 10.0 43200 > th dose independent rect. 6 3
966 209.24 atmosphere 995.0 720 > th dose independent rect. 10 15
970 209.24 atmosphere 995.0 43200 < th dose dependent sin 8 NA