Os10g0524400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phospholipase D beta 2.
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Os10g0524400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phospholipase D beta 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.88 | 0.252 | 8.8 | 0.518 | 1.59 | 2.68 | 1.56 | 0.838 | 0.297 | 18.8 | 1.553 | 787 | -- | -- |
| 28.83 | 0.25 | 8.8 | 0.527 | 1.53 | 2.6 | 0.96 | -- | 0.306 | 18.9 | 1.815 | 796 | -- | -- |
| 29.24 | 0.252 | 8.79 | 0.557 | 1.45 | 2.51 | -- | -1.25 | 0.332 | 19.3 | 2.118 | 829 | -- | -- |
| 31.09 | 0.26 | 8.79 | 0.505 | 1.41 | 2.45 | -- | -- | 0.31 | 19.1 | 1.817 | 810 | -- | -- |
| 38.09 | 0.287 | 8.77 | 0.371 | -- | 1.02 | -- | 0.876 | 0.292 | -- | 2.145 | 1700 | -- | -- |
| 41.66 | 0.303 | 8.77 | 0.314 | 0.467 | -- | -0.438 | -- | 0.211 | 4.47 | -- | -- | -- | -- |
| 42.12 | 0.304 | 8.77 | 0.317 | 0.463 | -- | -- | -- | 0.213 | 4.23 | -- | -- | -- | -- |
| 35.73 | 0.278 | 8.76 | 0.418 | -- | 0.915 | -- | -- | 0.297 | -- | 2.25 | 1936 | -- | -- |
| 37.3 | 0.284 | 8.78 | -- | 1.14 | 2.1 | -- | -- | 0.268 | 19.1 | 2.214 | 800 | -- | -- |
| 53.73 | 0.343 | 8.77 | 0.336 | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
| 44.77 | 0.313 | 8.78 | -- | 0.469 | -- | -- | -- | 0.178 | 4.22 | -- | -- | -- | -- |
| 40.35 | 0.296 | 8.75 | -- | -- | 0.89 | -- | -- | 0.286 | -- | 2.6 | 1936 | -- | -- |
| 56.7 | 0.351 | 8.78 | -- | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.15 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 2 | 29.50 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 4 | 29.73 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 15 | 29.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 16 | 30.00 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 19 | 30.15 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 23 | 30.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 27 | 30.28 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 46 | 30.38 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 50 | 30.40 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 58 | 30.48 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 70 | 30.63 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 76 | 30.67 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 81 | 30.69 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 82 | 30.71 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 88 | 30.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 96 | 30.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 98 | 30.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 106 | 30.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 107 | 30.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 147 | 30.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 161 | 30.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 162 | 30.94 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 9 |
| 177 | 31.00 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 182 | 31.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 186 | 31.04 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 209 | 31.05 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 211 | 31.07 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 224 | 31.09 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 226 | 31.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 232 | 31.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 280 | 31.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 292 | 31.11 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 341 | 31.16 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 378 | 31.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 380 | 31.23 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 459 | 31.45 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 493 | 31.54 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 830 | 32.43 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 853 | 32.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 897 | 32.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 941 | 32.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 17 |