Os10g0523100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isopenicillin N synthase family protein.
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Os10g0523100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isopenicillin N synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.89 | 0.244 | 9.72 | -0.843 | 0.196 | 0.587 | 0.486 | 0.0182 | -0.153 | 21.4 | 20.4 | 1185 | -- | -- |
| 26.85 | 0.241 | 9.72 | -0.844 | 0.198 | 0.579 | 0.489 | -- | -0.155 | 21.4 | 20.5 | 1199 | -- | -- |
| 27.63 | 0.245 | 9.72 | -0.848 | 0.201 | 0.593 | -- | 0.0993 | -0.152 | 22 | 20.51 | 1233 | -- | -- |
| 27.65 | 0.245 | 9.72 | -0.861 | 0.197 | 0.582 | -- | -- | -0.156 | 21.9 | 20.51 | 1226 | -- | -- |
| 29.62 | 0.253 | 9.72 | -0.835 | -- | 0.619 | -- | 0.169 | -0.151 | -- | 20.48 | 1065 | -- | -- |
| 35.06 | 0.278 | 9.7 | -0.608 | 0.235 | -- | 0.443 | -- | -0.022 | 21.9 | -- | -- | -- | -- |
| 35.72 | 0.28 | 9.7 | -0.626 | 0.233 | -- | -- | -- | -0.024 | 22.6 | -- | -- | -- | -- |
| 29.67 | 0.254 | 9.72 | -0.863 | -- | 0.592 | -- | -- | -0.159 | -- | 20.5 | 1069 | -- | -- |
| 43.68 | 0.308 | 9.7 | -- | 0.182 | 0.246 | -- | -- | -0.0489 | 22.2 | 22.4 | 1017 | -- | -- |
| 39.06 | 0.292 | 9.69 | -0.622 | -- | -- | -- | -- | -0.0229 | -- | -- | -- | -- | -- |
| 46.06 | 0.317 | 9.68 | -- | 0.229 | -- | -- | -- | 0.0458 | 22.4 | -- | -- | -- | -- |
| 45.65 | 0.315 | 9.69 | -- | -- | 0.269 | -- | -- | -0.0373 | -- | 22.38 | 903 | -- | -- |
| 49.27 | 0.328 | 9.67 | -- | -- | -- | -- | -- | 0.0461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 8 | 26.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 10 | 26.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 14 | 26.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 19 | 26.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 96 | 26.72 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 122 | 26.82 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 260 | 27.30 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 302 | 27.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 347 | 27.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 354 | 27.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 10 |
| 369 | 27.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 415 | 27.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 433 | 27.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 460 | 27.73 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 483 | 27.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 10 |
| 543 | 27.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 13 |
| 581 | 27.88 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 628 | 27.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 682 | 27.99 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 724 | 28.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 746 | 28.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 847 | 28.14 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 850 | 28.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 903 | 28.20 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 904 | 28.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 7 |