Os10g0522900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isopenicillin N synthase family protein.
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Os10g0522900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isopenicillin N synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.55 | 0.272 | 11.6 | -1.38 | 0.419 | 0.948 | -0.266 | -0.429 | 0.0808 | 23 | 20.5 | 1476 | -- | -- |
| 33.95 | 0.271 | 11.6 | -1.31 | 0.421 | 1.02 | -0.269 | -- | 0.0789 | 23.1 | 20.5 | 1451 | -- | -- |
| 33.84 | 0.271 | 11.6 | -1.37 | 0.42 | 0.944 | -- | -0.44 | 0.0819 | 23 | 20.54 | 1473 | -- | -- |
| 34.17 | 0.272 | 11.6 | -1.29 | 0.413 | 0.996 | -- | -- | 0.0941 | 23 | 20.6 | 1441 | -- | -- |
| 42.8 | 0.305 | 11.6 | -1.33 | -- | 0.924 | -- | -0.348 | 0.0797 | -- | 20.68 | 1112 | -- | -- |
| 55.9 | 0.351 | 11.6 | -0.886 | 0.429 | -- | -0.25 | -- | 0.324 | 23.3 | -- | -- | -- | -- |
| 56.16 | 0.351 | 11.6 | -0.876 | 0.43 | -- | -- | -- | 0.326 | 23.2 | -- | -- | -- | -- |
| 43.13 | 0.306 | 11.6 | -1.26 | -- | 0.955 | -- | -- | 0.103 | -- | 20.62 | 1110 | -- | -- |
| 67.43 | 0.385 | 11.6 | -- | 0.55 | 0.383 | -- | -- | 0.32 | 23.3 | 22.3 | 1485 | -- | -- |
| 67.73 | 0.385 | 11.5 | -0.866 | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
| 76.38 | 0.409 | 11.5 | -- | 0.422 | -- | -- | -- | 0.423 | 23.1 | -- | -- | -- | -- |
| 74.68 | 0.402 | 11.6 | -- | -- | 0.506 | -- | -- | 0.269 | -- | 22.4 | 889 | -- | -- |
| 87.49 | 0.437 | 11.5 | -- | -- | -- | -- | -- | 0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 4 | 33.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 5 | 33.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 15 |
| 10 | 33.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 12 | 33.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 19 | 33.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 24 | 33.85 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 27 | 33.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 64 | 33.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 77 | 33.96 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 275 | 34.38 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 276 | 34.39 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 285 | 34.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 294 | 34.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 315 | 34.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 317 | 34.53 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 324 | 34.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 325 | 34.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 326 | 34.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 367 | 34.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 381 | 34.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 387 | 34.69 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 391 | 34.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 406 | 34.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 416 | 34.75 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 424 | 34.77 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 433 | 34.79 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 572 | 35.15 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 581 | 35.18 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 639 | 35.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 795 | 35.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 810 | 35.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 825 | 35.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 905 | 35.91 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 944 | 35.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |