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Os10g0521000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to TRE1 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.22 (0.0511) R2 : 0.51
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.95 (0.119) R2dC : 0.292 R2C : 0.204
β3 : 2.59 (0.167) R2dE : 0.336 R2E : 0.211
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.2 (0.118) R2dN8 : 0.00422 R2N8 : -0.0349
σ : 0.927
deviance : 396.23
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C
peak time of C : 11.2
E
wheather : temperature
threshold : 24.7
memory length : 1672
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 3.77

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
391.4 0.93 7.21 0.738 1.9 2.23 -1.4 -0.618 0.279 11.5 24.8 1632 17 6.83
386.63 0.916 7.21 0.565 1.96 2.38 -1.16 -- 0.312 11.4 24.8 1647 18.2 5.17
394.15 0.925 7.21 0.548 1.91 2.29 -- -0.254 0.287 11.4 24.76 1621 18.2 5.38
392.66 0.923 7.21 0.47 1.92 2.42 -- -- 0.269 11.4 24.61 1646 18.3 4.6
528.16 1.07 7.22 1.01 -- 2.19 -- -1.12 0.331 -- 24.7 2587 18.6 5.27
586.35 1.14 7.45 -0.157 1.65 -- -1.14 -- -0.719 11.9 -- -- -- --
591.9 1.14 7.46 -0.204 1.66 -- -- -- -0.725 11.7 -- -- -- --
518.71 1.06 7.22 0.38 -- 2.27 -- -- 0.0504 -- 24.68 2478 19.4 6.18
396.23 0.927 7.22 -- 1.95 2.59 -- -- 0.2 11.2 24.7 1672 18.4 3.77
765 1.29 7.49 -0.252 -- -- -- -- -0.746 -- -- -- -- --
593 1.14 7.45 -- 1.66 -- -- -- -0.703 11.8 -- -- -- --
521.98 1.06 7.22 -- -- 2.37 -- -- 0.0611 -- 24.7 2464 19 6.93
766.68 1.29 7.49 -- -- -- -- -- -0.718 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 395.94 temperature 20 1440 > th dose dependent rect. 19 10
60 401.49 temperature 20 1440 > th dose dependent sin 11 NA
128 408.22 temperature 30 270 < th dose dependent rect. 16 19
141 409.22 temperature 30 270 < th dose dependent rect. 16 21
170 412.31 temperature 30 1440 < th dose dependent rect. 17 7
176 412.66 temperature 20 720 > th dose dependent rect. 15 22
257 415.20 temperature 30 270 < th dose dependent rect. 3 22
300 416.38 temperature 10 270 > th dose dependent rect. 20 23
341 417.19 temperature 25 1440 < th dose independent rect. 17 7
361 417.65 temperature 25 1440 < th dose independent rect. 18 5
394 418.34 temperature 20 270 > th dose dependent rect. 9 21
413 418.59 temperature 20 720 > th dose dependent no NA NA
419 418.78 temperature 20 720 > th dose dependent rect. 7 23
430 418.99 temperature 20 720 > th dose dependent rect. 5 23
449 419.42 temperature 25 1440 > th dose independent rect. 17 7
485 419.93 temperature 20 720 > th dose dependent rect. 24 23
540 420.67 temperature 30 720 < th dose dependent rect. 8 21
552 420.85 temperature 30 1440 < th dose dependent sin 12 NA
616 421.59 temperature 25 1440 < th dose independent rect. 20 1
678 422.33 temperature 25 1440 < th dose independent rect. 17 18
802 423.75 temperature 30 270 < th dose dependent no NA NA
933 425.04 temperature 30 720 < th dose dependent rect. 23 23
960 425.28 temperature 25 1440 > th dose independent rect. 17 18
990 425.71 temperature 25 1440 > th dose independent rect. 17 16