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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0520000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Spectrin repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.68 (0.0428) R2 : 0.0904
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.606 (0.09) R2dN8 : 0.117 R2N8 : 0.0904
σ : 0.805
deviance : 297.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.93 0.77 4.68 -0.0691 0.479 -0.119 0.545 -2.63 0.598 10.1 59 4478 -- --
274.72 0.772 4.67 0.0068 0.519 -0.523 0.535 -- 0.555 9.9 35 5598 -- --
270.06 0.765 4.68 -0.0484 0.475 -0.144 -- -2.59 0.594 10.4 58.82 4487 -- --
275.2 0.773 4.67 0.0557 0.503 -0.562 -- -- 0.573 10.3 38.99 6912 -- --
283.78 0.785 4.69 -0.0481 -- -0.12 -- -2.77 0.599 -- 58 4497 -- --
280.61 0.785 4.67 -0.198 0.502 -- 0.49 -- 0.586 10.3 -- -- -- --
281.53 0.786 4.67 -0.177 0.498 -- -- -- 0.587 10.5 -- -- -- --
289.84 0.793 4.68 0.0405 -- -0.575 -- -- 0.567 -- 36.84 7059 -- --
275.19 0.773 4.67 -- 0.49 -0.536 -- -- 0.566 10.5 38.46 6583 -- --
296.75 0.805 4.68 -0.186 -- -- -- -- 0.585 -- -- -- -- --
282.36 0.786 4.66 -- 0.499 -- -- -- 0.607 10.5 -- -- -- --
289.88 0.793 4.69 -- -- -0.558 -- -- 0.564 -- 37.18 6656 -- --
297.66 0.805 4.68 -- -- -- -- -- 0.606 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.23 temperature 15.0 30 > th dose dependent rect. 2 7
5 264.32 radiation 20.0 90 < th dose independent rect. 1 21
6 264.37 humidity 50.0 4320 > th dose independent rect. 3 7
7 264.49 temperature 20.0 10 > th dose independent rect. 2 7
11 265.09 wind 1.0 14400 < th dose dependent rect. 1 2
13 265.12 atmosphere 995.0 10 > th dose dependent rect. 2 7
15 265.29 radiation 20.0 10 < th dose independent rect. 2 10
20 265.45 radiation 40.0 90 < th dose dependent rect. 1 21
22 265.54 radiation 20.0 10 < th dose independent rect. 2 20
25 265.61 wind 9.0 10 < th dose independent rect. 2 7
26 265.61 temperature 10.0 10 > th dose independent rect. 2 7
28 265.61 temperature 30.0 10 < th dose independent rect. 2 7
29 265.61 humidity 50.0 10 > th dose independent rect. 2 7
31 265.61 atmosphere 995.0 10 > th dose independent rect. 2 7
32 265.61 atmosphere 1015.0 10 < th dose independent rect. 2 7
33 265.61 precipitation 0.1 10 < th dose independent rect. 2 7
34 265.61 temperature 10.0 10 > th dose independent rect. 9 17
35 265.61 precipitation 0.1 10 < th dose dependent rect. 2 7
46 265.64 temperature 10.0 1440 > th dose independent rect. 3 7
49 265.64 atmosphere 995.0 1440 > th dose independent rect. 3 7
50 265.64 temperature 10.0 1440 > th dose independent rect. 10 17
55 265.65 temperature 30.0 270 < th dose independent rect. 10 23
57 265.66 precipitation 0.1 10 < th dose independent rect. 9 17
58 265.66 precipitation 0.1 10 < th dose dependent rect. 9 17
60 265.69 radiation 40.0 30 < th dose independent rect. 2 7
61 265.72 wind 9.0 10 < th dose dependent rect. 2 20
73 265.96 radiation 20.0 10 < th dose independent rect. 2 14
79 266.10 atmosphere 995.0 30 > th dose independent rect. 9 17
89 266.26 radiation 20.0 90 < th dose independent rect. 1 11
93 266.31 wind 9.0 10 < th dose dependent rect. 2 18
94 266.35 radiation 20.0 10 < th dose independent rect. 2 7
95 266.36 wind 7.0 10 < th dose independent rect. 2 20
100 266.46 wind 9.0 30 < th dose dependent rect. 2 7
109 266.57 temperature 30.0 270 < th dose independent rect. 22 23
112 266.60 radiation 20.0 10 < th dose independent rect. 2 18
113 266.62 wind 3.0 14400 < th dose dependent rect. 6 4
114 266.64 wind 9.0 30 < th dose independent rect. 9 17
117 266.66 wind 1.0 14400 < th dose independent rect. 4 7
118 266.66 wind 1.0 14400 < th dose independent rect. 1 12
126 266.75 temperature 20.0 10 > th dose independent rect. 18 15
128 266.76 temperature 20.0 10 > th dose independent rect. 15 18
131 266.79 humidity 70.0 270 > th dose dependent rect. 19 6
132 266.81 radiation 20.0 90 < th dose independent rect. 1 15
143 266.91 wind 1.0 14400 > th dose independent rect. 4 7
148 266.94 wind 1.0 14400 > th dose independent rect. 1 12
149 266.94 wind 7.0 10 < th dose independent rect. 2 18
153 266.97 wind 1.0 14400 < th dose dependent rect. 24 13
159 267.00 wind 1.0 14400 > th dose independent rect. 7 3
173 267.05 temperature 20.0 270 > th dose dependent rect. 9 1
175 267.06 wind 1.0 14400 < th dose independent rect. 7 3
190 267.10 atmosphere 1005.0 30 > th dose independent rect. 2 7
206 267.19 wind 3.0 10 < th dose independent rect. 2 17
210 267.19 humidity 60.0 14400 < th dose dependent rect. 18 19
220 267.24 humidity 60.0 14400 < th dose dependent rect. 10 3
240 267.27 humidity 60.0 14400 < th dose dependent rect. 8 5
254 267.31 wind 7.0 270 < th dose dependent rect. 20 4
266 267.31 wind 9.0 90 < th dose dependent rect. 1 21
276 267.36 wind 1.0 14400 > th dose independent rect. 8 1
277 267.37 humidity 50.0 30 > th dose independent rect. 9 17
278 267.37 radiation 10.0 43200 < th dose dependent rect. 12 2
291 267.40 wind 7.0 10 < th dose dependent rect. 2 16
304 267.45 humidity 50.0 14400 > th dose independent rect. 16 21
307 267.46 humidity 50.0 14400 < th dose independent rect. 16 21
310 267.47 wind 1.0 14400 < th dose independent rect. 1 2
328 267.51 radiation 20.0 270 > th dose independent rect. 9 2
329 267.51 wind 5.0 10 < th dose dependent rect. 22 4
337 267.53 humidity 60.0 14400 < th dose dependent sin 9 NA
376 267.65 temperature 20.0 270 > th dose dependent rect. 7 4
399 267.71 wind 3.0 14400 < th dose dependent sin 5 NA
428 267.78 radiation 40.0 10 < th dose dependent rect. 2 7
429 267.79 wind 1.0 14400 < th dose independent sin 4 NA
435 267.79 wind 9.0 10 < th dose dependent rect. 2 14
444 267.81 wind 5.0 270 < th dose dependent rect. 22 1
447 267.82 wind 1.0 14400 > th dose independent sin 4 NA
456 267.84 wind 1.0 14400 < th dose independent rect. 8 1
501 267.89 wind 1.0 14400 < th dose independent rect. 1 16
550 267.95 wind 1.0 14400 > th dose independent rect. 1 16
562 267.98 temperature 20.0 30 > th dose dependent rect. 9 6
565 267.99 humidity 60.0 14400 < th dose independent rect. 18 17
579 268.01 temperature 10.0 30 > th dose dependent rect. 9 17
580 268.02 humidity 50.0 14400 > th dose independent sin 10 NA
590 268.03 humidity 80.0 270 > th dose independent rect. 19 5
677 268.15 wind 1.0 14400 > th dose dependent rect. 6 1
678 268.15 wind 9.0 14400 < th dose dependent rect. 6 1
699 268.17 wind 1.0 14400 < th dose dependent rect. 19 18
700 268.18 humidity 60.0 4320 < th dose independent rect. 14 1
733 268.22 humidity 60.0 14400 < th dose independent rect. 8 3
740 268.23 wind 1.0 14400 < th dose independent rect. 4 13
755 268.25 humidity 50.0 14400 > th dose independent sin 17 NA
765 268.26 wind 1.0 14400 > th dose independent rect. 4 13
779 268.27 temperature 15.0 30 > th dose dependent rect. 18 15
788 268.28 radiation 40.0 10 < th dose dependent rect. 2 20
793 268.29 humidity 50.0 14400 > th dose independent rect. 10 23
801 268.30 humidity 50.0 14400 < th dose independent rect. 17 19
817 268.32 humidity 50.0 14400 > th dose independent rect. 1 20
824 268.33 humidity 50.0 14400 > th dose independent no NA NA
825 268.33 humidity 50.0 14400 < th dose independent sin 17 NA
826 268.33 humidity 50.0 14400 > th dose independent rect. 8 13
837 268.33 humidity 50.0 14400 > th dose independent rect. 2 17
854 268.33 humidity 50.0 14400 > th dose independent rect. 8 19
883 268.33 humidity 50.0 14400 > th dose independent rect. 20 23
888 268.33 humidity 50.0 30 > th dose dependent rect. 2 7
891 268.34 humidity 50.0 14400 > th dose independent rect. 8 11
892 268.34 humidity 50.0 14400 > th dose independent rect. 10 11
918 268.34 wind 9.0 270 < th dose independent rect. 24 20
947 268.35 humidity 50.0 14400 > th dose independent rect. 10 9