Os10g0519300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment).
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Os10g0519300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.74 | 0.348 | 12.7 | 1.34 | 2.29 | -0.79 | 0.761 | 4.97 | 0.146 | 7.87 | 20.01 | 691 | -- | -- |
| 65.48 | 0.377 | 12.8 | 0.713 | 2.45 | -0.777 | -0.243 | -- | 0.0505 | 7.82 | 13.27 | 18026 | -- | -- |
| 56.18 | 0.349 | 12.7 | 1.27 | 2.26 | -0.801 | -- | 4.58 | 0.121 | 7.86 | 20.02 | 687 | -- | -- |
| 65.58 | 0.377 | 12.8 | 0.705 | 2.48 | -0.768 | -- | -- | 0.0605 | 7.84 | 10.81 | 17000 | -- | -- |
| 233.55 | 0.712 | 12.7 | 2.1 | -- | -3.03 | -- | 9.24 | 0.365 | -- | 24.3 | 627 | -- | -- |
| 75.22 | 0.407 | 12.8 | 0.135 | 2.49 | -- | -0.311 | -- | -0.256 | 7.88 | -- | -- | -- | -- |
| 75.5 | 0.407 | 12.8 | 0.126 | 2.49 | -- | -- | -- | -0.255 | 7.88 | -- | -- | -- | -- |
| 281.39 | 0.781 | 12.8 | 0.999 | -- | -2.09 | -- | -- | 0.0927 | -- | 24.4 | 670 | -- | -- |
| 71.14 | 0.393 | 12.8 | -- | 2.49 | -0.442 | -- | -- | -0.203 | 7.82 | 13.2 | 4119 | -- | -- |
| 412 | 0.948 | 12.9 | 0.154 | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
| 75.92 | 0.408 | 12.8 | -- | 2.49 | -- | -- | -- | -0.27 | 7.88 | -- | -- | -- | -- |
| 281.88 | 0.782 | 12.9 | -- | -- | -2.1 | -- | -- | -0.0862 | -- | 24.4 | 607 | -- | -- |
| 412.63 | 0.948 | 12.9 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 13 | 53.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 14 | 53.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 18 | 53.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 21 | 53.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 24 | 53.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 37 | 54.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 46 | 54.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 18 |
| 63 | 54.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 74 | 54.37 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 79 | 54.38 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 81 | 54.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 92 | 54.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 112 | 54.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 122 | 54.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 127 | 54.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 134 | 54.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 135 | 54.52 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 163 | 54.56 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 218 | 54.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 225 | 54.67 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 259 | 54.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 295 | 54.79 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 307 | 54.81 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 312 | 54.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 317 | 54.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 321 | 54.83 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 367 | 54.88 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 439 | 54.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 568 | 55.08 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 570 | 55.08 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 628 | 55.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 800 | 55.23 | temperature | 20 | 270 | > th | dose dependent | sin | 15 | NA |
| 899 | 55.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 949 | 55.31 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 3 |