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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0515900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.048) R2 : 0.197
β1 : -0.919 (0.174) R2dD : 0.0609 R2D : -0.0285
β2 : 0.614 (0.106) R2dC : 0.0589 R2C : 0.0304
β3 : -18.8 (2.83) R2dE : 1.69 R2E : -2.12
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -85.4 (11.2) R2dD*E : 2.24 R2D*E : -1.59
γ1 : -0.111 (0.0929) R2dN8 : 0.0035 R2N8 : -0.0325
σ : 0.811
deviance : 303.47
__
_____
C
peak time of C : 9.62
E
wheather : wind
threshold : 9.048
memory length : 87
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.97
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.44 0.818 3.63 -0.926 0.612 -19 0.0821 -86.1 -0.113 9.64 9.06 89 6.98 --
351.03 0.879 3.8 -0.497 0.561 -0.535 0.334 -- -0.159 10.1 9.06 89 6.98 --
303.47 0.811 3.63 -0.919 0.614 -18.8 -- -85.4 -0.111 9.62 9.048 87 6.97 --
339.79 0.859 3.78 -0.478 0.623 2.45 -- -- -0.164 9.77 9.1 75 9.16 --
325.43 0.84 3.65 -0.927 -- -18.8 -- -84.3 -0.116 -- 9.046 87 7.02 --
351.31 0.879 3.8 -0.491 0.566 -- 0.32 -- -0.157 10.1 -- -- -- --
351.71 0.878 3.8 -0.478 0.564 -- -- -- -0.156 10.2 -- -- -- --
357.29 0.88 3.82 -0.309 -- 2.48 -- -- -0.112 -- 9.1 75 12.2 --
341.04 0.86 3.79 -- 0.594 2.37 -- -- -0.106 9.62 9 75 13 --
370.99 0.9 3.81 -0.486 -- -- -- -- -0.157 -- -- -- -- --
357.74 0.885 3.79 -- 0.566 -- -- -- -0.103 10.2 -- -- -- --
359.15 0.883 3.79 -- -- 2.14 -- -- -0.0606 -- 9.066 75 14.7 --
377.23 0.907 3.8 -- -- -- -- -- -0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 292.91 wind 9.0 10 > th dose independent rect. 18 1
4 292.91 wind 9.0 10 > th dose dependent rect. 18 1
10 299.36 wind 9.0 90 > th dose dependent rect. 16 10
18 299.38 wind 9.0 90 > th dose dependent rect. 16 6
27 301.10 wind 9.0 90 > th dose independent rect. 16 10
36 301.14 wind 9.0 90 > th dose independent rect. 16 6
76 305.83 wind 9.0 90 > th dose independent sin 13 NA
77 307.58 humidity 70.0 90 < th dose independent rect. 16 1
78 308.22 wind 9.0 90 > th dose dependent sin 13 NA
81 309.21 wind 9.0 90 > th dose independent rect. 12 6
116 309.53 wind 9.0 90 > th dose independent rect. 12 14
124 309.55 wind 9.0 90 > th dose independent rect. 12 10
129 309.59 wind 9.0 90 > th dose independent rect. 12 8
150 311.19 wind 9.0 90 < th dose independent sin 14 NA
154 311.80 wind 9.0 90 > th dose dependent rect. 12 6
189 313.16 wind 9.0 90 > th dose dependent rect. 12 10
190 313.16 wind 9.0 90 > th dose dependent rect. 12 14
223 320.55 temperature 10.0 720 > th dose dependent rect. 3 2
242 326.86 temperature 10.0 90 > th dose dependent rect. 3 12
246 326.94 temperature 20.0 270 > th dose dependent rect. 3 10
268 327.75 atmosphere 1005.0 30 > th dose dependent rect. 16 2
270 327.85 humidity 70.0 90 < th dose independent rect. 16 15
285 328.64 atmosphere 1010.0 90 < th dose independent rect. 3 12
315 330.06 temperature 20.0 720 > th dose independent rect. 3 2
404 330.55 radiation 1.0 43200 < th dose dependent rect. 3 1
423 330.72 temperature 25.0 270 > th dose independent rect. 3 10
433 330.91 atmosphere 1005.0 30 > th dose independent rect. 16 2
522 331.78 atmosphere 1010.0 720 < th dose independent rect. 3 2
568 332.21 temperature 25.0 270 > th dose independent rect. 8 5
570 332.25 radiation 10.0 720 < th dose independent rect. 3 4
573 332.34 temperature 25.0 270 < th dose dependent rect. 5 6
590 332.67 temperature 25.0 90 < th dose independent rect. 6 12
644 333.07 temperature 30.0 720 < th dose dependent rect. 24 8
648 333.11 atmosphere 1005.0 30 > th dose dependent rect. 2 1
650 333.12 temperature 20.0 30 > th dose dependent rect. 2 1
680 333.28 temperature 25.0 90 > th dose independent rect. 8 7
683 333.29 temperature 20.0 270 > th dose dependent sin 5 NA
684 333.29 wind 3.0 30 < th dose dependent rect. 2 1
688 333.33 atmosphere 1005.0 30 > th dose independent rect. 2 1
704 333.47 temperature 20.0 270 > th dose dependent rect. 8 5
717 333.56 wind 9.0 1440 < th dose independent rect. 3 1
718 333.56 temperature 20.0 30 > th dose independent rect. 2 1
719 333.56 temperature 10.0 1440 > th dose independent rect. 3 1
722 333.56 temperature 30.0 1440 < th dose independent rect. 3 1
726 333.56 humidity 50.0 1440 > th dose independent rect. 3 1
735 333.56 atmosphere 995.0 1440 > th dose independent rect. 3 1
736 333.56 radiation 1.0 1440 < th dose independent rect. 3 1
756 333.56 temperature 10.0 1440 > th dose independent rect. 4 23
760 333.56 radiation 1.0 1440 < th dose dependent rect. 3 1
776 333.63 wind 3.0 30 < th dose independent rect. 2 1
785 333.68 temperature 20.0 90 > th dose dependent rect. 8 7
796 333.80 wind 5.0 720 > th dose independent rect. 15 2
798 333.80 humidity 80.0 90 < th dose dependent rect. 16 1
810 333.93 humidity 80.0 30 > th dose independent rect. 2 1
813 333.94 temperature 30.0 270 < th dose dependent sin 3 NA
835 334.04 humidity 80.0 30 > th dose dependent rect. 2 1
851 334.11 temperature 10.0 30 > th dose independent rect. 2 1
853 334.11 temperature 30.0 30 < th dose independent rect. 2 1
854 334.11 temperature 25.0 10 < th dose independent rect. 12 1
856 334.11 humidity 50.0 30 > th dose independent rect. 2 1
860 334.11 atmosphere 1010.0 30 < th dose independent rect. 2 1
862 334.11 radiation 1.0 30 < th dose independent rect. 2 1
867 334.11 precipitation 0.1 30 < th dose independent rect. 2 1
870 334.11 temperature 10.0 30 > th dose independent rect. 3 23
871 334.11 radiation 1.0 30 < th dose dependent rect. 2 1
876 334.11 precipitation 0.1 30 < th dose dependent rect. 2 1
905 334.29 atmosphere 1010.0 720 > th dose independent rect. 6 1
921 334.38 temperature 30.0 30 < th dose dependent rect. 7 5
957 334.62 temperature 25.0 270 < th dose independent rect. 5 7
962 334.65 wind 9.0 10 > th dose independent sin 12 NA
963 334.65 wind 9.0 10 < th dose independent rect. 3 23
971 334.68 humidity 50.0 720 > th dose independent rect. 15 2
982 334.75 temperature 25.0 270 > th dose independent rect. 10 1