FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0512800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : tRNA-binding arm domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0564) R2 : 0.152
β1 : -1.36 (0.211) R2dD : 0.0839 R2D : 0.0251
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.08 (0.152) R2dE : 0.101 R2E : 0.065
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.299 (0.121) R2dN8 : 0.0153 R2N8 : 0.011
σ : 1.05
deviance : 511.46
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.5
memory length : 1275
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
501.5 1.05 3.54 -1.95 0.399 1.38 0.733 -2.91 -0.356 6.21 28.62 1267 -- --
502.21 1.04 3.47 -1.37 0.402 1.05 0.716 -- -0.293 6.23 28.76 1245 -- --
502.74 1.04 3.54 -1.95 0.405 1.38 -- -2.91 -0.376 6.03 28.48 1257 -- --
503.41 1.04 3.47 -1.36 0.401 1.05 -- -- -0.3 5.91 28.61 1265 -- --
511.1 1.05 3.53 -1.79 -- 1.32 -- -2.18 -0.344 -- 28.5 1266 -- --
554.05 1.1 3.49 -1.06 0.479 -- 0.771 -- -0.411 4.95 -- -- -- --
555.53 1.1 3.5 -1.06 0.483 -- -- -- -0.415 4.73 -- -- -- --
511.46 1.05 3.48 -1.36 -- 1.08 -- -- -0.299 -- 28.5 1275 -- --
549.3 1.09 3.42 -- 0.393 0.853 -- -- -0.089 5.97 29.9 1231 -- --
567.89 1.11 3.5 -1.04 -- -- -- -- -0.403 -- -- -- -- --
585.19 1.13 3.47 -- 0.464 -- -- -- -0.297 4.8 -- -- -- --
557.01 1.1 3.43 -- -- 0.87 -- -- -0.0915 -- 30.2 1285 -- --
596.56 1.14 3.48 -- -- -- -- -- -0.287 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 492.12 temperature 30 4320 > th dose dependent rect. 18 1
15 492.44 humidity 80 720 < th dose dependent rect. 18 4
18 493.34 humidity 50 4320 < th dose dependent rect. 16 1
20 494.36 humidity 50 4320 < th dose independent rect. 16 1
22 494.66 humidity 80 720 < th dose dependent rect. 17 13
26 494.82 radiation 20 1440 > th dose dependent rect. 16 16
29 494.91 radiation 20 1440 > th dose independent rect. 16 16
33 495.13 humidity 80 720 < th dose dependent rect. 17 10
40 496.07 wind 1 30 < th dose independent rect. 4 12
47 496.49 radiation 20 1440 < th dose independent rect. 16 16
59 497.37 humidity 50 4320 > th dose independent rect. 16 13
63 497.44 humidity 50 4320 > th dose independent rect. 16 11
66 497.46 humidity 50 4320 > th dose independent rect. 16 17
68 497.54 humidity 50 4320 > th dose independent rect. 16 4
74 497.72 humidity 50 4320 > th dose independent rect. 16 7
98 498.03 radiation 20 1440 > th dose dependent rect. 6 2
116 498.27 temperature 30 4320 > th dose independent rect. 18 1
132 498.32 temperature 30 4320 < th dose independent rect. 18 5
161 498.70 humidity 80 720 < th dose independent rect. 18 4
163 498.77 temperature 30 4320 < th dose independent rect. 18 2
179 498.89 humidity 70 4320 < th dose independent rect. 19 1
217 499.25 temperature 30 4320 < th dose independent rect. 18 11
219 499.26 temperature 30 4320 < th dose independent rect. 18 8
244 500.10 radiation 20 1440 > th dose independent rect. 6 2
258 500.13 temperature 30 4320 < th dose independent rect. 18 14
286 500.27 humidity 60 4320 > th dose independent rect. 18 9
288 500.37 humidity 60 4320 > th dose independent rect. 18 11
309 500.72 humidity 60 4320 > th dose independent rect. 18 2
310 500.75 humidity 60 4320 > th dose independent rect. 18 7
347 501.16 temperature 25 1440 > th dose dependent rect. 6 2
384 501.46 radiation 20 1440 < th dose independent rect. 16 1
387 501.50 radiation 20 1440 > th dose independent rect. 16 1
435 501.94 radiation 20 1440 < th dose independent rect. 16 11
494 502.15 radiation 40 1440 < th dose dependent rect. 17 10
497 502.17 radiation 1 1440 > th dose dependent rect. 17 12
514 502.21 radiation 20 1440 < th dose independent rect. 16 4
515 502.21 radiation 1 1440 > th dose dependent rect. 17 2
575 502.46 radiation 20 1440 < th dose independent rect. 16 9
587 502.59 temperature 30 1440 > th dose dependent rect. 10 1
597 502.64 temperature 30 1440 > th dose dependent rect. 17 19
604 502.68 wind 1 30 < th dose dependent rect. 4 11
668 502.99 temperature 30 1440 < th dose independent rect. 18 17
669 503.02 humidity 70 720 > th dose independent rect. 19 8
681 503.19 temperature 30 1440 > th dose dependent sin 10 NA
682 503.19 radiation 20 1440 < th dose dependent rect. 17 3
686 503.22 radiation 20 1440 < th dose independent rect. 7 1
687 503.23 radiation 20 1440 < th dose independent rect. 23 9
694 503.25 radiation 20 1440 < th dose dependent rect. 17 8
705 503.35 temperature 30 1440 > th dose independent rect. 18 17
709 503.38 radiation 40 1440 < th dose dependent rect. 16 16
713 503.41 radiation 20 1440 < th dose independent rect. 2 6
722 503.50 radiation 20 1440 < th dose independent rect. 19 13
744 503.55 temperature 30 1440 < th dose independent rect. 10 1
795 503.85 temperature 30 1440 > th dose independent rect. 10 1
796 503.86 temperature 30 14400 < th dose independent rect. 16 11
815 503.88 temperature 30 14400 < th dose independent rect. 16 9
818 503.89 temperature 30 14400 < th dose independent rect. 16 3
821 503.89 temperature 30 14400 < th dose independent rect. 16 15
826 503.92 wind 1 270 < th dose independent rect. 4 1
834 503.95 wind 1 30 < th dose independent sin 2 NA
842 504.03 temperature 30 1440 > th dose independent sin 11 NA
847 504.05 humidity 70 720 > th dose independent rect. 17 9
848 504.06 temperature 30 14400 > th dose dependent sin 12 NA
849 504.08 temperature 30 1440 < th dose independent sin 11 NA
858 504.11 temperature 30 720 < th dose independent rect. 17 9
926 504.45 wind 1 1440 < th dose independent rect. 4 2
970 504.57 temperature 30 1440 > th dose independent rect. 16 3