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Os10g0510400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF248, methyltransferase putative family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0251) R2 : 0.785
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.21 (0.109) R2dC : 1.36 R2C : -1.71
β3 : 4.65 (0.116) R2dE : 2.47 R2E : -0.584
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.245 (0.0527) R2dN8 : 0.0132 R2N8 : 0.0125
σ : 0.47
deviance : 101.93
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C
peak time of C : 0.988
E
wheather : temperature
threshold : -27.78
memory length : 359
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.38
open length of G : 9.23

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.86 0.448 10.7 -0.242 1.99 3.36 0.768 -2.26 -0.34 23.1 7.939 290 8.03 8.7
91.03 0.444 10.7 -0.0864 2.89 4.63 1.91 -- -0.26 0.72 -3.692 357 7.38 9.15
89.59 0.441 10.7 -0.207 2.11 3.43 -- -2.61 -0.312 23.4 0.7674 303 8.07 8.5
102.25 0.471 10.7 -0.168 3.32 4.89 -- -- -0.285 1.11 -16.94 355 7.4 9.25
159.55 0.588 10.7 -0.268 -- 2.94 -- -2.31 -0.356 -- 8.13 591 8.18 8.81
172.25 0.615 10.7 0.0903 2.39 -- -0.431 -- -0.229 18.1 -- -- -- --
172.68 0.615 10.7 0.0941 2.39 -- -- -- -0.231 18.2 -- -- -- --
160.54 0.59 10.7 -0.183 -- 2.82 -- -- -0.357 -- 5.226 632 8.02 8.82
101.93 0.47 10.7 -- 3.21 4.65 -- -- -0.245 0.988 -27.78 359 7.38 9.23
468.14 1.01 10.7 0.0273 -- -- -- -- -0.284 -- -- -- -- --
172.92 0.615 10.7 -- 2.39 -- -- -- -0.242 18.2 -- -- -- --
156.23 0.582 10.7 -- -- 2.91 -- -- -0.338 -- 1.343 909 6.16 9.65
468.16 1.01 10.7 -- -- -- -- -- -0.287 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.45 temperature 10.0 270 > th dose dependent rect. 8 9
2 94.56 temperature 10.0 270 > th dose dependent rect. 10 17
5 96.28 radiation 1.0 270 > th dose independent rect. 9 8
48 104.68 humidity 90.0 270 < th dose independent rect. 9 8
49 104.80 temperature 30.0 270 < th dose independent rect. 3 8
51 104.87 temperature 10.0 270 > th dose dependent rect. 23 16
54 105.71 precipitation 0.1 270 < th dose independent rect. 3 8
55 105.71 precipitation 0.1 270 < th dose dependent rect. 3 8
58 105.99 temperature 15.0 270 > th dose independent rect. 9 8
59 106.06 temperature 30.0 270 < th dose independent rect. 17 16
60 106.06 precipitation 0.1 270 < th dose independent rect. 17 16
61 106.06 precipitation 0.1 270 < th dose dependent rect. 17 16
62 106.43 humidity 50.0 270 > th dose independent rect. 17 16
68 106.97 radiation 30.0 270 < th dose independent rect. 14 9
70 107.08 temperature 10.0 270 > th dose dependent rect. 22 18
71 107.14 radiation 40.0 270 < th dose independent rect. 4 6
72 107.27 radiation 1.0 90 > th dose independent sin 7 NA
77 107.79 temperature 10.0 90 > th dose dependent rect. 11 7
78 107.82 precipitation 0.1 270 < th dose independent rect. 9 8
79 107.82 precipitation 0.1 270 < th dose dependent rect. 9 8
80 107.85 humidity 50.0 270 > th dose dependent rect. 21 7
81 107.90 radiation 30.0 270 < th dose independent rect. 17 16
83 107.92 wind 9.0 270 < th dose independent rect. 9 8
84 107.93 temperature 10.0 270 > th dose independent rect. 3 8
85 107.93 atmosphere 995.0 270 > th dose independent rect. 3 8
86 107.93 atmosphere 1015.0 270 < th dose independent rect. 3 8
87 107.93 temperature 10.0 270 > th dose independent rect. 11 16
88 108.04 wind 9.0 270 < th dose independent rect. 17 16
91 108.16 atmosphere 1015.0 270 < th dose independent rect. 9 8
92 108.16 temperature 10.0 270 > th dose independent rect. 17 16
97 108.46 wind 9.0 270 < th dose independent rect. 3 8
99 108.54 wind 9.0 270 < th dose independent rect. 11 16
100 108.57 radiation 20.0 270 < th dose dependent rect. 4 19
103 108.71 radiation 40.0 270 < th dose independent rect. 3 8
112 108.91 humidity 50.0 270 > th dose independent rect. 3 8
119 109.08 atmosphere 995.0 270 > th dose independent rect. 17 16
130 109.47 radiation 20.0 270 < th dose dependent rect. 3 21
139 109.95 radiation 40.0 270 < th dose dependent rect. 14 9
140 109.98 radiation 1.0 90 > th dose independent rect. 4 7
152 110.12 radiation 1.0 90 < th dose independent sin 7 NA
159 110.19 radiation 1.0 90 > th dose independent rect. 11 8
173 110.25 humidity 50.0 270 > th dose independent rect. 15 8
174 110.31 wind 9.0 270 < th dose independent rect. 23 16
179 110.41 precipitation 0.1 270 < th dose independent rect. 11 16
180 110.41 precipitation 0.1 270 < th dose dependent rect. 11 16
182 110.42 wind 1.0 270 > th dose independent rect. 9 8
205 110.81 radiation 1.0 90 < th dose dependent sin 7 NA
208 110.85 temperature 10.0 270 > th dose independent rect. 15 8
209 110.85 temperature 10.0 270 > th dose independent rect. 23 16
220 111.14 precipitation 0.1 270 < th dose independent rect. 15 8
221 111.14 precipitation 0.1 270 < th dose dependent rect. 15 8
222 111.16 wind 9.0 270 < th dose independent rect. 15 8
226 111.21 radiation 40.0 270 < th dose independent rect. 4 18
242 111.45 precipitation 0.1 270 < th dose independent rect. 5 16
244 111.45 precipitation 0.1 270 < th dose dependent rect. 5 16
248 111.52 atmosphere 1015.0 270 < th dose independent rect. 23 16
249 111.53 radiation 1.0 270 < th dose dependent rect. 21 8
253 111.55 humidity 50.0 270 > th dose independent rect. 23 16
254 111.58 radiation 40.0 270 < th dose dependent rect. 17 16
262 111.67 radiation 1.0 90 < th dose independent rect. 23 8
267 111.74 atmosphere 995.0 270 > th dose independent rect. 23 16
268 111.75 humidity 70.0 270 > th dose independent rect. 4 6
270 111.75 radiation 1.0 270 < th dose independent rect. 21 8
278 111.87 temperature 15.0 10 > th dose dependent rect. 11 19
281 111.91 temperature 10.0 270 > th dose independent rect. 21 8
282 111.91 temperature 30.0 270 < th dose independent rect. 21 8
283 111.91 humidity 50.0 270 > th dose independent rect. 21 8
286 111.91 atmosphere 995.0 270 > th dose independent rect. 21 8
290 111.91 temperature 10.0 270 > th dose independent rect. 5 16
298 112.04 humidity 80.0 270 > th dose independent rect. 22 6
300 112.09 wind 9.0 270 < th dose independent rect. 21 8
303 112.18 wind 1.0 270 > th dose independent rect. 3 7
317 112.43 wind 1.0 270 > th dose independent rect. 15 8
325 112.55 radiation 10.0 90 < th dose dependent rect. 23 7
333 112.70 precipitation 0.1 270 < th dose independent rect. 23 16
334 112.70 precipitation 0.1 270 < th dose dependent rect. 23 16
341 112.81 humidity 70.0 270 > th dose independent rect. 4 17
361 113.10 humidity 90.0 270 < th dose dependent rect. 9 7
366 113.13 atmosphere 1015.0 270 < th dose independent rect. 5 16
373 113.25 wind 1.0 90 > th dose independent rect. 5 6
378 113.31 atmosphere 995.0 270 > th dose independent rect. 9 8
379 113.31 humidity 50.0 270 > th dose dependent rect. 4 7
382 113.34 radiation 40.0 270 < th dose dependent rect. 4 6
393 113.45 wind 9.0 270 < th dose independent rect. 5 16
402 113.62 atmosphere 995.0 270 > th dose independent rect. 15 8
406 113.65 temperature 10.0 270 > th dose dependent rect. 22 6
422 113.75 radiation 40.0 270 < th dose dependent rect. 5 4
451 114.05 wind 1.0 270 > th dose independent rect. 17 15
485 114.53 temperature 30.0 90 < th dose independent rect. 6 17
494 114.59 wind 1.0 270 > th dose independent rect. 16 17
530 114.83 humidity 50.0 270 > th dose dependent rect. 4 17
531 114.84 precipitation 0.1 270 < th dose independent rect. 21 8
532 114.84 precipitation 0.1 270 < th dose dependent rect. 21 8
547 115.00 radiation 10.0 270 < th dose dependent sin 22 NA
553 115.03 radiation 1.0 270 > th dose independent sin 22 NA
618 115.43 humidity 70.0 10 > th dose dependent rect. 22 8
623 115.46 temperature 30.0 270 < th dose dependent rect. 4 17
639 115.68 humidity 70.0 30 > th dose independent rect. 6 18
642 115.70 temperature 30.0 10 < th dose independent rect. 6 6
650 115.77 radiation 20.0 270 < th dose independent rect. 4 19
730 116.33 temperature 30.0 270 < th dose independent rect. 15 8
752 116.50 wind 9.0 270 < th dose dependent rect. 4 6
828 116.99 humidity 80.0 270 > th dose independent rect. 23 4
891 117.61 atmosphere 995.0 270 > th dose independent rect. 4 17
905 117.75 atmosphere 995.0 270 > th dose independent rect. 10 18
909 117.79 radiation 1.0 90 > th dose independent sin 19 NA
912 117.83 atmosphere 995.0 270 > th dose independent rect. 11 16
936 117.98 radiation 1.0 270 < th dose independent sin 22 NA
943 118.02 atmosphere 1015.0 270 < th dose independent rect. 22 6
982 118.36 humidity 50.0 270 > th dose independent rect. 4 17
985 118.38 humidity 50.0 270 > th dose dependent rect. 5 4