Os10g0509200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAP fibrillin family protein.
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Os10g0509200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAP fibrillin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.5 | 0.516 | 8.44 | -0.94 | 1.31 | -1.29 | 0.76 | 0.67 | -0.258 | 6.42 | 19.5 | 2501 | -- | -- |
| 121.8 | 0.514 | 8.45 | -0.938 | 1.31 | -1.39 | 0.854 | -- | -0.251 | 6.31 | 19.59 | 2621 | -- | -- |
| 121.78 | 0.514 | 8.44 | -0.905 | 1.32 | -1.32 | -- | 0.705 | -0.251 | 6.47 | 19.52 | 2621 | -- | -- |
| 122.48 | 0.515 | 8.46 | -1.01 | 1.33 | -1.47 | -- | -- | -0.276 | 6.47 | 19.47 | 2643 | -- | -- |
| 208.32 | 0.672 | 8.46 | -0.93 | -- | -1.16 | -- | 1.15 | -0.222 | -- | 19.7 | 2154 | -- | -- |
| 159.02 | 0.591 | 8.54 | -1.76 | 1.29 | -- | 0.87 | -- | -0.597 | 6.66 | -- | -- | -- | -- |
| 160.93 | 0.594 | 8.54 | -1.74 | 1.29 | -- | -- | -- | -0.6 | 6.68 | -- | -- | -- | -- |
| 207.29 | 0.671 | 8.49 | -1.03 | -- | -1.46 | -- | -- | -0.269 | -- | 19.5 | 2105 | -- | -- |
| 133.45 | 0.538 | 8.45 | -- | 1.45 | -1.98 | -- | -- | -0.11 | 6.58 | 18.6 | 9826 | -- | -- |
| 248.04 | 0.736 | 8.56 | -1.71 | -- | -- | -- | -- | -0.574 | -- | -- | -- | -- | -- |
| 241.15 | 0.726 | 8.49 | -- | 1.27 | -- | -- | -- | -0.405 | 6.76 | -- | -- | -- | -- |
| 217.37 | 0.687 | 8.45 | -- | -- | -2.15 | -- | -- | -0.0463 | -- | 18.9 | 7947 | -- | -- |
| 325.58 | 0.842 | 8.52 | -- | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 3 | 121.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 5 | 121.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 11 |
| 11 | 122.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 15 |
| 18 | 122.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 13 |
| 19 | 122.27 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 24 | 122.29 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 25 | 122.29 | temperature | 20 | 4320 | < th | dose dependent | rect. | 19 | 6 |
| 29 | 122.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 40 | 122.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 47 | 122.49 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 51 | 122.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 17 |
| 65 | 122.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 18 |
| 106 | 123.00 | temperature | 20 | 4320 | < th | dose dependent | sin | 18 | NA |
| 170 | 123.34 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 210 | 123.50 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 341 | 124.16 | temperature | 20 | 4320 | < th | dose dependent | rect. | 19 | 17 |
| 434 | 124.34 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 22 |
| 452 | 124.36 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 487 | 124.41 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 517 | 124.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 10 |
| 535 | 124.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 546 | 124.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 554 | 124.62 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 7 |
| 574 | 124.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 3 |
| 587 | 124.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 588 | 124.73 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 589 | 124.73 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 590 | 124.73 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 623 | 124.82 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 625 | 124.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 631 | 124.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 642 | 124.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 647 | 124.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 650 | 124.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 659 | 124.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 686 | 124.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 710 | 124.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 719 | 125.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 20 |
| 802 | 125.15 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 817 | 125.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 835 | 125.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 927 | 125.41 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 931 | 125.42 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 932 | 125.42 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 944 | 125.44 | humidity | 60 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 974 | 125.50 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 982 | 125.52 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 8 |