Os10g0507000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os10g0507000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.65 | 0.381 | 8.4 | 0.204 | 0.98 | 1.11 | 1.1 | 1.72 | 0.457 | 2.96 | 9.543 | 4157 | -- | -- |
| 68.35 | 0.385 | 8.47 | -0.0939 | 0.964 | 0.849 | 1.33 | -- | 0.371 | 2.74 | 20.6 | 5415 | -- | -- |
| 69.33 | 0.388 | 8.39 | 0.259 | 0.982 | 1.12 | -- | 2.03 | 0.471 | 3.22 | 10.88 | 3974 | -- | -- |
| 71.75 | 0.395 | 8.45 | -0.104 | 1.01 | 0.838 | -- | -- | 0.399 | 3.18 | 21.57 | 5234 | -- | -- |
| 123 | 0.517 | 8.39 | 0.248 | -- | 1.35 | -- | 2.25 | 0.464 | -- | 9.195 | 3969 | -- | -- |
| 87.99 | 0.44 | 8.42 | 0.286 | 1.05 | -- | 1.2 | -- | 0.555 | 2.89 | -- | -- | -- | -- |
| 92.79 | 0.451 | 8.42 | 0.258 | 1.06 | -- | -- | -- | 0.547 | 3.06 | -- | -- | -- | -- |
| 121.97 | 0.514 | 8.45 | -0.048 | -- | 0.973 | -- | -- | 0.417 | -- | 23.6 | 2618 | -- | -- |
| 71.59 | 0.394 | 8.45 | -- | 0.969 | 0.85 | -- | -- | 0.413 | 3.22 | 22.16 | 3977 | -- | -- |
| 157.3 | 0.586 | 8.42 | 0.303 | -- | -- | -- | -- | 0.575 | -- | -- | -- | -- | -- |
| 94.54 | 0.455 | 8.43 | -- | 1.07 | -- | -- | -- | 0.518 | 3.06 | -- | -- | -- | -- |
| 122.03 | 0.514 | 8.45 | -- | -- | 0.961 | -- | -- | 0.427 | -- | 23.67 | 2618 | -- | -- |
| 159.72 | 0.59 | 8.42 | -- | -- | -- | -- | -- | 0.541 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.15 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 58.43 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 16 | 58.45 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 22 | 58.48 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 24 | 58.73 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 27 | 58.73 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 31 | 58.74 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 35 | 58.80 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 42 | 59.07 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 45 | 59.11 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 65 | 59.13 | radiation | 1.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 128 | 59.30 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 132 | 59.32 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 134 | 59.33 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 135 | 59.34 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 147 | 59.35 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 164 | 59.37 | radiation | 1.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 180 | 59.37 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 185 | 59.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 196 | 59.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 198 | 59.40 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 201 | 59.41 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 285 | 59.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 11 |
| 296 | 59.52 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 15 | NA |
| 326 | 59.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 335 | 59.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 360 | 59.60 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 365 | 59.61 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 387 | 59.65 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 398 | 59.66 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 408 | 59.69 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 441 | 59.72 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 9 | NA |
| 453 | 59.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 454 | 59.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 463 | 59.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 583 | 59.90 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 584 | 59.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 585 | 59.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 590 | 59.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 729 | 60.06 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 9 | NA |
| 730 | 60.06 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 9 | NA |
| 738 | 60.06 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 9 | NA |
| 755 | 60.08 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 817 | 60.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 11 |
| 864 | 60.14 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 880 | 60.15 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 884 | 60.15 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 886 | 60.15 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 22 |
| 893 | 60.16 | radiation | 1.0 | 43200 | > th | dose independent | no | NA | NA |
| 897 | 60.16 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 15 |