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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0506000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pentatricopeptide repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0411) R2 : 0.00157
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0734 (0.0865) R2dN8 : 0.00203 R2N8 : 0.00157
σ : 0.774
deviance : 275.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
255.29 0.751 3.01 0.332 0.199 -0.376 1.5 10.5 -0.0314 16.1 0.003765 7 -- --
256.27 0.746 3.02 0.326 0.225 2.72 1.47 -- -0.027 16.3 -1.452 4 -- --
260.82 0.752 3.01 0.339 0.243 0.615 -- 6.68 -0.0194 17.8 0.0322 6 -- --
261.31 0.753 3.02 0.337 0.257 2.51 -- -- -0.0168 17.8 -0.9489 8 -- --
263.94 0.757 3.01 0.342 -- -0.0511 -- 8.66 -0.0283 -- -0.7509 6 -- --
264.12 0.762 3.02 0.369 0.204 -- 1.34 -- -0.0338 16.4 -- -- -- --
268.38 0.767 3.02 0.378 0.243 -- -- -- -0.0268 18.1 -- -- -- --
264.37 0.757 3.01 0.315 -- 2.32 -- -- -0.0215 -- -0.4068 13 -- --
263.94 0.757 3.03 -- 0.24 2.47 -- -- -0.051 17.8 -0.7425 13 -- --
271.44 0.77 3.02 0.371 -- -- -- -- -0.0322 -- -- -- -- --
272.15 0.772 3.03 -- 0.237 -- -- -- -0.0689 18.2 -- -- -- --
266.96 0.761 3.02 -- -- 2.47 -- -- -0.0553 -- -2.264 13 -- --
275.07 0.774 3.03 -- -- -- -- -- -0.0734 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.95 wind 9.0 30 > th dose dependent rect. 11 1
29 248.33 wind 9.0 30 > th dose dependent sin 5 NA
31 248.58 wind 9.0 30 > th dose dependent rect. 19 17
33 248.59 wind 9.0 30 < th dose independent rect. 3 23
43 249.49 wind 9.0 30 > th dose independent rect. 11 1
46 249.58 precipitation 0.1 90 > th dose independent rect. 13 1
49 249.58 precipitation 0.1 90 > th dose dependent rect. 13 1
52 249.67 precipitation 0.1 10 < th dose independent rect. 7 23
53 249.67 precipitation 0.1 10 < th dose dependent rect. 7 23
57 250.15 radiation 10.0 10 < th dose dependent rect. 14 1
77 250.45 radiation 10.0 10 < th dose independent rect. 14 1
160 251.20 wind 9.0 30 > th dose independent sin 4 NA
195 251.78 temperature 25.0 10 < th dose dependent rect. 13 1
216 252.28 wind 9.0 30 > th dose independent rect. 19 17
223 252.43 precipitation 0.1 90 > th dose dependent rect. 24 16
224 252.44 atmosphere 1015.0 30 < th dose independent rect. 3 23
231 252.49 precipitation 0.1 90 > th dose dependent rect. 21 19
239 252.56 precipitation 0.1 10 < th dose independent rect. 14 23
240 252.56 precipitation 0.1 10 < th dose dependent rect. 14 23
247 252.72 precipitation 0.1 90 > th dose dependent rect. 3 13
271 252.84 precipitation 0.1 720 < th dose independent rect. 15 16
272 252.84 precipitation 0.1 720 < th dose dependent rect. 15 16
322 252.98 wind 9.0 30 < th dose independent sin 7 NA
323 253.01 precipitation 0.1 90 > th dose independent rect. 24 16
326 253.02 radiation 1.0 43200 < th dose dependent rect. 3 1
328 253.06 precipitation 0.1 720 < th dose independent rect. 19 8
330 253.06 precipitation 0.1 720 < th dose dependent rect. 19 8
356 253.31 precipitation 0.1 90 > th dose independent rect. 3 13
357 253.31 atmosphere 1005.0 30 > th dose dependent rect. 2 1
360 253.33 precipitation 0.1 90 > th dose dependent rect. 21 22
370 253.40 precipitation 0.1 10 < th dose independent rect. 23 13
372 253.40 precipitation 0.1 10 < th dose dependent rect. 23 13
375 253.44 atmosphere 1005.0 270 > th dose dependent rect. 22 8
380 253.47 temperature 20.0 30 > th dose dependent rect. 2 1
382 253.50 wind 3.0 30 < th dose independent rect. 2 1
383 253.50 humidity 90.0 90 > th dose independent rect. 9 1
384 253.50 humidity 90.0 90 > th dose dependent rect. 9 1
385 253.51 atmosphere 1005.0 30 > th dose independent rect. 2 1
388 253.56 precipitation 0.1 90 > th dose dependent sin 3 NA
389 253.57 precipitation 0.1 90 > th dose dependent rect. 24 19
401 253.64 wind 3.0 30 < th dose dependent rect. 2 1
457 253.85 precipitation 0.1 90 > th dose independent rect. 21 19
459 253.85 precipitation 0.1 90 > th dose dependent rect. 3 16
463 253.87 temperature 25.0 90 < th dose independent rect. 12 2
465 253.88 temperature 25.0 10 < th dose independent rect. 13 1
480 253.94 precipitation 0.1 90 < th dose independent sin 6 NA
481 253.94 precipitation 0.1 90 < th dose dependent sin 6 NA
483 253.95 temperature 10.0 30 > th dose independent rect. 2 1
486 253.95 temperature 30.0 30 < th dose independent rect. 2 1
487 253.95 humidity 50.0 30 > th dose independent rect. 2 1
490 253.95 atmosphere 995.0 30 > th dose independent rect. 2 1
491 253.95 atmosphere 1010.0 30 < th dose independent rect. 2 1
493 253.95 radiation 1.0 30 < th dose independent rect. 2 1
498 253.95 precipitation 0.1 30 < th dose independent rect. 2 1
499 253.95 temperature 10.0 30 > th dose independent rect. 3 23
500 253.95 radiation 1.0 30 < th dose dependent rect. 2 1
505 253.95 precipitation 0.1 30 < th dose dependent rect. 2 1
516 254.03 humidity 50.0 30 > th dose dependent rect. 2 1
519 254.06 wind 9.0 30 > th dose independent rect. 19 21
527 254.09 precipitation 0.1 10 < th dose independent rect. 20 17
529 254.09 precipitation 0.1 10 < th dose dependent rect. 20 17
537 254.20 precipitation 0.1 90 > th dose independent sin 5 NA
545 254.25 humidity 90.0 30 > th dose independent rect. 2 1
547 254.26 wind 9.0 30 < th dose independent sin 0 NA
581 254.45 atmosphere 1015.0 30 < th dose dependent rect. 2 1
583 254.46 wind 9.0 30 > th dose independent rect. 11 9
594 254.48 temperature 10.0 10 > th dose dependent rect. 12 11
604 254.55 radiation 40.0 10 < th dose independent rect. 13 1
637 254.60 temperature 20.0 1440 > th dose independent rect. 14 1
646 254.65 temperature 30.0 30 < th dose dependent rect. 2 1
647 254.65 temperature 10.0 90 > th dose dependent rect. 12 11
652 254.68 wind 9.0 30 > th dose independent rect. 15 21
665 254.74 precipitation 0.1 10 < th dose independent rect. 3 23
668 254.74 precipitation 0.1 10 < th dose dependent rect. 3 23
711 254.84 radiation 1.0 4320 < th dose dependent rect. 3 1
721 254.91 precipitation 0.1 10 < th dose independent sin 10 NA
733 254.91 precipitation 0.1 10 < th dose dependent sin 10 NA
739 254.94 humidity 80.0 90 < th dose independent rect. 5 7
763 255.02 humidity 80.0 90 < th dose independent rect. 7 5
765 255.03 temperature 30.0 90 < th dose independent rect. 14 11
772 255.07 atmosphere 1005.0 30 > th dose dependent rect. 13 1
783 255.12 wind 9.0 1440 < th dose independent rect. 3 1
784 255.12 temperature 10.0 1440 > th dose independent rect. 3 1
787 255.12 temperature 30.0 1440 < th dose independent rect. 3 1
791 255.12 humidity 50.0 1440 > th dose independent rect. 3 1
800 255.12 atmosphere 995.0 1440 > th dose independent rect. 3 1
801 255.12 radiation 1.0 1440 < th dose independent rect. 3 1
825 255.12 temperature 10.0 1440 > th dose independent rect. 4 23
841 255.16 precipitation 0.1 10 < th dose independent rect. 9 23
844 255.16 precipitation 0.1 10 < th dose dependent rect. 9 23
869 255.24 wind 1.0 30 > th dose independent rect. 2 1
874 255.27 atmosphere 995.0 720 > th dose dependent rect. 19 7
876 255.28 precipitation 0.1 10 > th dose dependent rect. 1 22
884 255.29 precipitation 0.1 10 > th dose dependent rect. 19 13
913 255.36 humidity 50.0 30 > th dose independent rect. 23 13
916 255.37 precipitation 0.1 10 > th dose independent rect. 19 13
917 255.37 humidity 70.0 10 > th dose independent rect. 1 14
953 255.44 humidity 50.0 30 > th dose independent rect. 14 23
955 255.45 precipitation 0.1 10 > th dose independent rect. 1 22
968 255.47 precipitation 0.1 10 > th dose dependent no NA NA