Os10g0502200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0502200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.08 | 0.532 | 12.4 | 0.515 | 0.389 | -1.4 | 1.23 | -3.29 | 0.153 | 14.3 | 11.28 | 6 | -- | -- |
| 134.4 | 0.54 | 12.3 | 0.965 | 0.345 | -1.39 | 0.409 | -- | 0.264 | 14.4 | 9.492 | 3 | -- | -- |
| 131.79 | 0.535 | 12.4 | 0.73 | 0.368 | -1.35 | -- | -1.87 | 0.205 | 14.4 | 12.35 | 3 | -- | -- |
| 134.78 | 0.541 | 12.3 | 0.986 | 0.358 | -1.38 | -- | -- | 0.275 | 14.4 | 12.8 | 3 | -- | -- |
| 137.11 | 0.545 | 12.4 | 0.647 | -- | -0.927 | -- | -1.8 | 0.141 | -- | 10.48 | 4 | -- | -- |
| 153 | 0.58 | 12.4 | 0.712 | 0.0348 | -- | -0.161 | -- | 0.0796 | 0.513 | -- | -- | -- | -- |
| 153.11 | 0.579 | 12.4 | 0.718 | 0.0367 | -- | -- | -- | 0.0802 | 1.48 | -- | -- | -- | -- |
| 139.83 | 0.551 | 12.4 | 0.894 | -- | -0.96 | -- | -- | 0.21 | -- | 11.36 | 3 | -- | -- |
| 157.99 | 0.585 | 12.4 | -- | 0.205 | -0.904 | -- | -- | 0.108 | 14.3 | 11.48 | 3 | -- | -- |
| 153.19 | 0.578 | 12.4 | 0.719 | -- | -- | -- | -- | 0.081 | -- | -- | -- | -- | -- |
| 166.68 | 0.604 | 12.4 | -- | 0.0497 | -- | -- | -- | 0.00024 | 1.97 | -- | -- | -- | -- |
| 159.72 | 0.589 | 12.4 | -- | -- | -0.68 | -- | -- | 0.0788 | -- | 10.91 | 3 | -- | -- |
| 166.83 | 0.603 | 12.4 | -- | -- | -- | -- | -- | 0.00117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.06 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 2 | 121.12 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 15 | 122.37 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 45 | 123.69 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 97 | 125.71 | temperature | 25.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 104 | 125.82 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 123 | 126.30 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 126 | 126.35 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 139 | 126.56 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 6 |
| 185 | 127.18 | temperature | 25.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 191 | 127.28 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 196 | 127.38 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 16 |
| 218 | 127.57 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 233 | 127.75 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 249 | 127.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 305 | 128.29 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 336 | 128.48 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 357 | 128.59 | temperature | 30.0 | 720 | > th | dose independent | sin | 7 | NA |
| 371 | 128.66 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 8 |
| 420 | 128.91 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 427 | 128.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 442 | 129.05 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 454 | 129.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 481 | 129.23 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 495 | 129.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 575 | 129.54 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 646 | 129.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 647 | 129.90 | temperature | 30.0 | 720 | < th | dose independent | sin | 8 | NA |
| 676 | 130.00 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 679 | 130.01 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 709 | 130.11 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 730 | 130.17 | temperature | 10.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 760 | 130.25 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 769 | 130.27 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 811 | 130.38 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 812 | 130.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 821 | 130.41 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 831 | 130.43 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 847 | 130.47 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 856 | 130.50 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 871 | 130.54 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 892 | 130.57 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 909 | 130.62 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 981 | 130.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 990 | 130.76 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 993 | 130.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 994 | 130.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 996 | 130.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |