Os10g0501300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os10g0501300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.38 | 0.275 | 9.49 | 1.63 | 0.921 | 1.19 | 0.582 | 1.84 | 0.401 | 15.9 | 20.8 | 1449 | -- | -- |
| 38.92 | 0.291 | 9.55 | 1.28 | 0.953 | 0.885 | 0.707 | -- | 0.302 | 16 | 21.7 | 1485 | -- | -- |
| 35.12 | 0.276 | 9.49 | 1.65 | 0.922 | 1.17 | -- | 1.83 | 0.408 | 15.8 | 20.9 | 1417 | -- | -- |
| 39.49 | 0.293 | 9.55 | 1.32 | 0.94 | 0.883 | -- | -- | 0.291 | 15.8 | 21.9 | 1374 | -- | -- |
| 78.47 | 0.413 | 9.48 | 1.72 | -- | 1.06 | -- | 1.88 | 0.413 | -- | 21.4 | 1751 | -- | -- |
| 64.34 | 0.376 | 9.5 | 1.66 | 0.898 | -- | 0.63 | -- | 0.561 | 15.9 | -- | -- | -- | -- |
| 65.48 | 0.379 | 9.49 | 1.67 | 0.9 | -- | -- | -- | 0.565 | 15.9 | -- | -- | -- | -- |
| 72.38 | 0.398 | 9.56 | 1.46 | -- | 0.635 | -- | -- | 0.224 | -- | 24.7 | 1742 | -- | -- |
| 66.06 | 0.379 | 9.61 | -- | 0.984 | 1.36 | -- | -- | 0.0301 | 16 | 21.1 | 7284 | -- | -- |
| 109.98 | 0.49 | 9.49 | 1.63 | -- | -- | -- | -- | 0.541 | -- | -- | -- | -- | -- |
| 138.66 | 0.551 | 9.54 | -- | 0.868 | -- | -- | -- | 0.379 | 15.9 | -- | -- | -- | -- |
| 101.79 | 0.47 | 9.61 | -- | -- | 1.39 | -- | -- | 0.0214 | -- | 18.57 | 47520 | -- | -- |
| 179.99 | 0.626 | 9.53 | -- | -- | -- | -- | -- | 0.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 28 | 34.94 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 43 | 35.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 71 | 35.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 96 | 35.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 110 | 35.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 111 | 35.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 118 | 35.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 131 | 35.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 159 | 35.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 208 | 36.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 242 | 36.19 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 251 | 36.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 257 | 36.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 283 | 36.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 284 | 36.31 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 303 | 36.39 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 307 | 36.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 312 | 36.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 330 | 36.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 381 | 36.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 393 | 36.76 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 402 | 36.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 411 | 36.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 412 | 36.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 422 | 36.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 453 | 36.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 463 | 36.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 472 | 37.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 498 | 37.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 499 | 37.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 517 | 37.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 522 | 37.16 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 556 | 37.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 566 | 37.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 647 | 37.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 687 | 37.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 721 | 37.55 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 727 | 37.56 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 774 | 37.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 787 | 37.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 818 | 37.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 866 | 37.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 929 | 37.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 956 | 37.96 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 992 | 38.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 5 |