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Os10g0501000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.04 (0.0229) R2 : 0.861
β1 : 2.41 (0.084) R2dD : 0.26 R2D : 0.142
β2 : 1.97 (0.0686) R2dC : 0.334 R2C : 0.449
β3 : -1.28 (0.0853) R2dE : 0.0912 R2E : 0.212
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.958 (0.049) R2dN8 : 0.157 R2N8 : 0.0313
σ : 0.428
deviance : 84.49
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_____
C
peak time of C : 17.5
E
wheather : radiation
threshold : 0.009999
memory length : 33
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.91
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.34 0.431 9.04 2.42 2.06 -1.27 0.717 0.825 0.963 17.6 0.44 35 4.36 --
84.07 0.427 9.04 2.41 1.98 -1.29 0.417 -- 0.964 17.5 0.009672 34 3.97 --
85.29 0.43 9.04 2.39 2.05 -1.26 -- 0.294 0.958 17.5 0.431 34 4.25 --
84.49 0.428 9.04 2.41 1.97 -1.28 -- -- 0.958 17.5 0.009999 33 3.91 --
211.14 0.68 8.97 2.4 -- -2.43 -- 0.526 1.1 -- 0.0009796 38 3.35 --
118.61 0.511 9.06 2.33 2.51 -- 0.519 -- 0.912 18 -- -- -- --
119.27 0.511 9.06 2.32 2.51 -- -- -- 0.914 18 -- -- -- --
204.13 0.668 8.97 2.36 -- -2.32 -- -- 1.08 -- 0.02 49 2.47 --
234.7 0.714 9.08 -- 2.16 -1.12 -- -- 0.79 17.6 2.75 48 4.69 --
446.63 0.988 9.02 2.25 -- -- -- -- 0.857 -- -- -- -- --
261.46 0.756 9.12 -- 2.48 -- -- -- 0.656 18 -- -- -- --
261.46 0.753 9.07 -- -- -2.48 -- -- 0.656 -- -23.36 347 2.85 --
580.06 1.12 9.08 -- -- -- -- -- 0.608 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.89 wind 9.0 270 < th dose independent rect. 7 20
2 75.23 precipitation 0.1 270 < th dose independent rect. 3 4
3 75.23 precipitation 0.1 270 < th dose dependent rect. 3 4
5 75.71 wind 5.0 270 < th dose independent rect. 3 4
6 75.77 radiation 40.0 270 < th dose dependent rect. 3 4
12 76.02 radiation 20.0 270 < th dose independent rect. 3 4
14 76.08 humidity 70.0 270 > th dose independent rect. 3 4
17 76.16 temperature 10.0 270 > th dose independent rect. 3 4
19 76.16 temperature 30.0 270 < th dose independent rect. 3 4
20 76.16 humidity 50.0 270 > th dose independent rect. 3 4
22 76.16 atmosphere 995.0 270 > th dose independent rect. 3 4
23 76.16 atmosphere 1015.0 270 < th dose independent rect. 3 4
25 76.16 temperature 10.0 270 > th dose independent rect. 7 20
27 76.53 radiation 20.0 270 < th dose independent rect. 2 6
30 76.86 precipitation 0.1 270 < th dose independent rect. 7 20
31 76.86 precipitation 0.1 270 < th dose dependent rect. 7 20
49 77.29 radiation 40.0 270 < th dose dependent rect. 2 6
55 77.48 humidity 50.0 270 > th dose dependent rect. 3 4
66 77.74 wind 9.0 270 < th dose dependent rect. 3 4
86 78.13 atmosphere 995.0 270 > th dose independent rect. 7 20
127 79.45 temperature 10.0 270 > th dose dependent rect. 3 4
199 80.72 atmosphere 995.0 270 > th dose dependent rect. 3 3
203 80.76 atmosphere 995.0 270 > th dose dependent rect. 21 5
215 81.03 wind 9.0 270 < th dose dependent rect. 7 19
247 81.44 wind 1.0 270 > th dose independent rect. 2 5
275 81.91 temperature 15.0 270 > th dose independent rect. 12 10
297 82.33 radiation 40.0 270 < th dose dependent rect. 15 16
305 82.43 precipitation 0.1 270 < th dose independent rect. 3 17
308 82.43 precipitation 0.1 270 < th dose dependent rect. 3 17
310 82.50 humidity 50.0 270 > th dose independent rect. 7 20
312 82.55 wind 9.0 10 < th dose dependent rect. 5 4
329 82.74 wind 9.0 270 < th dose independent rect. 22 14
333 82.76 wind 7.0 270 < th dose independent rect. 20 7
355 82.90 wind 9.0 270 < th dose independent rect. 7 9
367 82.96 atmosphere 995.0 270 > th dose dependent rect. 20 7
368 82.97 atmosphere 1010.0 270 < th dose independent rect. 12 10
387 83.15 precipitation 0.1 270 < th dose independent rect. 20 7
388 83.15 precipitation 0.1 270 < th dose dependent rect. 20 7
389 83.16 atmosphere 1000.0 90 > th dose independent rect. 22 6
391 83.16 temperature 10.0 270 > th dose independent rect. 22 14
392 83.16 atmosphere 995.0 270 > th dose independent rect. 22 14
412 83.25 temperature 10.0 270 > th dose independent rect. 20 7
413 83.25 temperature 30.0 270 < th dose independent rect. 20 7
414 83.25 humidity 50.0 270 > th dose independent rect. 20 7
417 83.25 atmosphere 995.0 270 > th dose independent rect. 20 7
418 83.25 radiation 1.0 270 < th dose independent rect. 20 7
423 83.25 temperature 10.0 270 > th dose independent rect. 3 17
424 83.25 atmosphere 1015.0 270 < th dose independent rect. 3 17
425 83.25 radiation 1.0 270 < th dose dependent rect. 20 7
441 83.41 temperature 15.0 270 > th dose independent rect. 15 16
442 83.42 atmosphere 995.0 90 > th dose dependent rect. 9 19
443 83.44 atmosphere 1000.0 270 > th dose independent rect. 22 3
449 83.49 temperature 10.0 1440 > th dose independent rect. 5 5
452 83.49 atmosphere 995.0 1440 > th dose independent rect. 5 5
453 83.49 atmosphere 1015.0 1440 < th dose independent rect. 5 5
455 83.49 temperature 10.0 1440 > th dose independent rect. 10 19
460 83.50 radiation 30.0 270 < th dose independent rect. 15 16
473 83.62 humidity 50.0 90 > th dose dependent rect. 4 7
479 83.73 temperature 10.0 270 > th dose independent rect. 7 8
480 83.73 atmosphere 1015.0 270 < th dose independent rect. 7 8
492 83.74 precipitation 0.1 270 < th dose independent rect. 7 8
494 83.74 precipitation 0.1 270 < th dose dependent rect. 7 8
528 83.87 precipitation 0.1 270 < th dose independent rect. 15 16
529 83.87 precipitation 0.1 270 < th dose dependent rect. 15 16
532 83.89 wind 7.0 270 < th dose independent rect. 21 5
543 83.91 precipitation 0.1 270 < th dose independent rect. 2 19
545 83.91 precipitation 0.1 270 < th dose dependent rect. 2 19
555 83.95 atmosphere 995.0 270 > th dose independent rect. 7 8
558 83.95 humidity 50.0 90 > th dose dependent rect. 22 6
571 84.07 atmosphere 1015.0 270 < th dose independent rect. 2 19
593 84.20 temperature 15.0 270 > th dose independent rect. 2 19
600 84.26 wind 1.0 270 > th dose independent rect. 12 10
609 84.29 temperature 10.0 90 > th dose independent rect. 22 6
610 84.29 temperature 30.0 90 < th dose independent rect. 22 6
611 84.29 humidity 50.0 90 > th dose independent rect. 22 6
615 84.29 radiation 1.0 90 < th dose independent rect. 22 6
624 84.29 radiation 1.0 90 < th dose dependent rect. 22 6
660 84.39 precipitation 0.1 270 < th dose independent rect. 21 5
661 84.39 precipitation 0.1 270 < th dose dependent rect. 21 5
709 84.58 humidity 50.0 270 > th dose dependent rect. 22 3
713 84.61 humidity 50.0 270 > th dose independent rect. 22 14
719 84.67 wind 5.0 270 < th dose independent rect. 22 3
730 84.75 precipitation 0.1 270 < th dose independent rect. 12 10
732 84.75 precipitation 0.1 270 < th dose dependent rect. 12 10
747 84.83 precipitation 0.1 270 < th dose independent rect. 22 14
748 84.83 precipitation 0.1 270 < th dose dependent rect. 22 14
751 84.86 radiation 40.0 90 < th dose independent rect. 4 18
770 84.90 wind 9.0 90 < th dose dependent rect. 22 6
788 84.92 wind 9.0 270 < th dose independent rect. 16 15
811 84.98 atmosphere 995.0 10 > th dose dependent rect. 22 7
815 85.00 radiation 1.0 30 < th dose dependent sin 10 NA
820 85.02 radiation 1.0 10 > th dose independent rect. 5 4
857 85.12 wind 9.0 270 < th dose dependent rect. 20 6
881 85.18 wind 9.0 270 < th dose independent rect. 3 17
907 85.30 precipitation 0.1 270 < th dose independent rect. 1 21
908 85.30 precipitation 0.1 270 < th dose dependent rect. 1 21
919 85.37 wind 9.0 270 < th dose dependent rect. 22 3
941 85.53 wind 9.0 1440 < th dose independent rect. 5 4
945 85.53 humidity 50.0 1440 > th dose independent rect. 5 4
956 85.56 precipitation 0.1 270 < th dose independent rect. 22 3
958 85.56 temperature 15.0 270 > th dose independent rect. 1 21
959 85.56 precipitation 0.1 270 < th dose dependent rect. 22 3
961 85.58 temperature 10.0 270 > th dose independent rect. 22 3
962 85.58 temperature 30.0 270 < th dose independent rect. 22 3
963 85.58 humidity 50.0 270 > th dose independent rect. 22 3
967 85.58 radiation 1.0 270 < th dose independent rect. 22 3
974 85.58 radiation 1.0 270 < th dose dependent rect. 22 3