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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0499900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0246) R2 : 0.000856
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0323 (0.0517) R2dN8 : 0.00111 R2N8 : 0.000856
σ : 0.463
deviance : 98.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.2 0.439 3.39 0.172 0.131 0.275 -0.248 3.01 0.0842 22.5 29.4 555 -- --
87.32 0.435 3.42 -0.0541 0.131 0.606 -0.226 -- 0.0808 22.2 29.9 546 -- --
87.44 0.436 3.39 0.171 0.137 0.276 -- 2.92 0.0817 22.4 29.62 537 -- --
87.52 0.436 3.42 -0.0423 0.136 0.595 -- -- 0.0805 22.2 29.9 538 -- --
88.47 0.438 3.39 0.113 -- 0.393 -- 2.23 0.085 -- 29.71 571 -- --
94.2 0.455 3.43 0.0302 0.268 -- 0.109 -- 0.0383 20 -- -- -- --
94.24 0.455 3.43 0.0268 0.268 -- -- -- 0.0382 20.1 -- -- -- --
88.55 0.438 3.41 -0.0468 -- 0.639 -- -- 0.0856 -- 29.8 582 -- --
87.57 0.436 3.41 -- 0.137 0.589 -- -- 0.085 22.2 29.92 538 -- --
98.18 0.463 3.42 0.0246 -- -- -- -- 0.035 -- -- -- -- --
94.26 0.454 3.43 -- 0.268 -- -- -- 0.0352 20.2 -- -- -- --
88.61 0.438 3.41 -- -- 0.633 -- -- 0.091 -- 29.89 582 -- --
98.2 0.463 3.42 -- -- -- -- -- 0.0323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.56 radiation 10 10 > th dose independent rect. 6 1
27 82.56 radiation 10 10 > th dose dependent rect. 6 1
53 83.32 atmosphere 1005 10 > th dose dependent rect. 2 6
62 84.94 atmosphere 1005 270 > th dose dependent rect. 2 1
65 85.09 temperature 25 90 > th dose dependent rect. 16 19
75 85.54 temperature 25 90 > th dose dependent sin 11 NA
91 86.01 temperature 30 720 < th dose independent rect. 19 18
102 86.33 temperature 25 10 > th dose independent rect. 4 3
105 86.39 wind 3 30 < th dose dependent rect. 6 1
119 86.66 atmosphere 1005 30 > th dose dependent rect. 6 1
123 86.73 temperature 25 270 > th dose dependent sin 14 NA
124 86.74 temperature 25 270 > th dose dependent rect. 15 10
137 86.82 temperature 30 270 < th dose independent rect. 8 15
142 86.86 temperature 30 270 < th dose independent rect. 7 22
156 86.91 temperature 30 270 < th dose independent rect. 15 11
159 86.92 temperature 15 90 > th dose dependent rect. 15 12
163 86.97 temperature 30 270 < th dose independent rect. 7 19
165 86.99 temperature 30 270 < th dose independent rect. 8 17
175 87.06 temperature 30 270 > th dose independent rect. 14 20
176 87.06 temperature 25 720 > th dose dependent rect. 5 4
177 87.07 humidity 90 90 < th dose independent rect. 2 5
178 87.07 temperature 30 270 < th dose independent rect. 9 22
181 87.07 temperature 10 270 > th dose dependent rect. 13 12
182 87.08 temperature 30 270 > th dose independent sin 15 NA
183 87.08 temperature 30 270 < th dose independent sin 15 NA
186 87.08 temperature 25 720 > th dose dependent rect. 8 1
189 87.09 temperature 20 30 > th dose dependent rect. 17 10
190 87.10 temperature 30 270 > th dose independent rect. 14 5
239 87.19 temperature 30 720 < th dose independent rect. 1 13
247 87.22 temperature 30 90 < th dose independent rect. 10 15
258 87.23 temperature 20 30 > th dose dependent rect. 17 5
283 87.29 humidity 70 10 > th dose independent sin 11 NA
288 87.30 temperature 20 30 > th dose dependent rect. 2 5
299 87.34 humidity 80 30 > th dose dependent rect. 6 1
321 87.38 temperature 30 720 < th dose independent rect. 2 11
324 87.38 temperature 25 270 > th dose dependent rect. 17 1
328 87.40 temperature 30 720 < th dose independent rect. 17 21
329 87.41 temperature 20 30 > th dose dependent rect. 17 3
332 87.41 radiation 20 720 > th dose dependent rect. 15 18
341 87.43 humidity 80 30 < th dose dependent rect. 17 17
360 87.48 temperature 30 720 > th dose dependent rect. 9 7
382 87.51 radiation 30 720 > th dose independent rect. 15 18
388 87.53 temperature 30 720 < th dose independent rect. 10 5
437 87.59 temperature 30 720 > th dose dependent rect. 13 3
526 87.72 temperature 30 720 > th dose independent rect. 9 7
527 87.72 temperature 30 270 < th dose independent rect. 14 23
531 87.73 temperature 30 720 < th dose independent rect. 11 2
541 87.74 temperature 30 720 > th dose dependent sin 5 NA
553 87.76 radiation 10 270 > th dose independent rect. 16 2
640 87.79 radiation 1 270 > th dose dependent rect. 16 15
651 87.81 atmosphere 1000 30 > th dose independent rect. 8 18
713 87.86 temperature 30 720 < th dose independent rect. 3 8
716 87.87 temperature 30 720 > th dose independent sin 4 NA
717 87.87 temperature 30 270 > th dose independent rect. 17 1
718 87.87 humidity 90 10 < th dose independent rect. 3 5
765 87.93 temperature 30 30 < th dose dependent rect. 6 1
820 88.01 humidity 70 270 > th dose independent rect. 17 12
850 88.06 temperature 30 720 < th dose independent rect. 2 20
851 88.06 temperature 20 30 > th dose dependent rect. 4 3
857 88.07 radiation 10 270 > th dose dependent rect. 16 2
953 88.13 humidity 70 90 < th dose independent sin 13 NA
962 88.14 radiation 10 270 < th dose dependent sin 13 NA