Os10g0499500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fertility restorer.
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Os10g0499500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fertility restorer.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.73 | 0.499 | 4.26 | 1.82 | 1.51 | 0.956 | 1.46 | 1.43 | 0.125 | 18.1 | 25.36 | 99 | -- | -- |
| 115.65 | 0.501 | 4.24 | 2.04 | 1.53 | 0.835 | 1.27 | -- | 0.173 | 18.2 | 25.69 | 137 | -- | -- |
| 117.64 | 0.505 | 4.26 | 1.85 | 1.48 | 0.968 | -- | 1.25 | 0.124 | 18 | 24.58 | 91 | -- | -- |
| 119.42 | 0.509 | 4.23 | 2.03 | 1.53 | 0.859 | -- | -- | 0.184 | 18.1 | 25.7 | 132 | -- | -- |
| 227.55 | 0.703 | 4.25 | 1.75 | -- | 0.747 | -- | 1.39 | 0.0252 | -- | 23.44 | 46 | -- | -- |
| 125.49 | 0.525 | 4.28 | 1.84 | 1.42 | -- | 1.37 | -- | -0.00234 | 18.6 | -- | -- | -- | -- |
| 130.02 | 0.534 | 4.27 | 1.82 | 1.42 | -- | -- | -- | 0.00272 | 18.4 | -- | -- | -- | -- |
| 230.08 | 0.71 | 4.23 | 1.91 | -- | 0.573 | -- | -- | 0.0647 | -- | 24.1 | 75 | -- | -- |
| 213.62 | 0.681 | 4.33 | -- | 1.26 | -0.535 | -- | -- | -0.266 | 18.5 | 38.93 | 475 | -- | -- |
| 235.38 | 0.717 | 4.25 | 1.78 | -- | -- | -- | -- | -0.0273 | -- | -- | -- | -- | -- |
| 217.24 | 0.689 | 4.32 | -- | 1.4 | -- | -- | -- | -0.2 | 18.5 | -- | -- | -- | -- |
| 276.38 | 0.774 | 4.33 | -- | -- | -1.62 | -- | -- | -0.415 | -- | 68.6 | 438 | -- | -- |
| 319.2 | 0.834 | 4.29 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 17 | 104.11 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 39 | 104.95 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 85 | 106.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 135 | 107.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 137 | 107.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 245 | 109.99 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 15 |
| 265 | 110.23 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 16 |
| 279 | 110.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 8 |
| 292 | 110.63 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 10 |
| 316 | 110.81 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 18 | 7 |
| 345 | 111.07 | temperature | 20 | 30 | > th | dose independent | rect. | 8 | 18 |
| 355 | 111.15 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 366 | 111.32 | temperature | 20 | 30 | > th | dose independent | rect. | 8 | 20 |
| 369 | 111.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 386 | 111.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 405 | 111.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 7 |
| 438 | 111.78 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 451 | 111.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 461 | 111.88 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 21 | 16 |
| 466 | 111.92 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 8 |
| 467 | 111.93 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 6 |
| 509 | 112.09 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 566 | 112.29 | temperature | 25 | 270 | > th | dose independent | sin | 8 | NA |
| 581 | 112.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 590 | 112.35 | temperature | 20 | 30 | > th | dose independent | rect. | 6 | 22 |
| 621 | 112.44 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 637 | 112.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 642 | 112.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 21 |
| 661 | 112.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 680 | 112.57 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 682 | 112.58 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 8 |
| 693 | 112.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 694 | 112.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 695 | 112.60 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 697 | 112.60 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 21 | 16 |
| 724 | 112.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 19 |
| 772 | 112.78 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 800 | 112.85 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 921 | 113.16 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 7 |
| 950 | 113.20 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |