Os10g0498600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os10g0498600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.44 | 0.28 | 12.8 | 1.63 | 0.6 | -0.763 | -0.0317 | 2.11 | 0.428 | 19.2 | 12.04 | 1181 | -- | -- |
| 39.54 | 0.293 | 12.8 | 1.32 | 0.606 | -0.718 | -0.0667 | -- | 0.377 | 18.8 | 11.63 | 7661 | -- | -- |
| 35.44 | 0.277 | 12.8 | 1.63 | 0.603 | -0.765 | -- | 2.11 | 0.428 | 19.2 | 12.28 | 1171 | -- | -- |
| 39.54 | 0.293 | 12.8 | 1.33 | 0.604 | -0.721 | -- | -- | 0.375 | 18.8 | 11.34 | 7628 | -- | -- |
| 53.41 | 0.34 | 12.8 | 1.64 | -- | -0.774 | -- | 2.08 | 0.426 | -- | 11.61 | 1328 | -- | -- |
| 47.88 | 0.324 | 12.9 | 0.961 | 0.601 | -- | -0.0627 | -- | 0.18 | 18.7 | -- | -- | -- | -- |
| 47.89 | 0.324 | 12.9 | 0.962 | 0.601 | -- | -- | -- | 0.18 | 18.7 | -- | -- | -- | -- |
| 57.6 | 0.353 | 12.8 | 1.32 | -- | -0.73 | -- | -- | 0.36 | -- | 10.14 | 7111 | -- | -- |
| 72.19 | 0.398 | 12.9 | -- | 0.601 | -0.101 | -- | -- | 0.0848 | 18.6 | 11.34 | 7628 | -- | -- |
| 66.73 | 0.382 | 12.8 | 0.948 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 72.3 | 0.398 | 12.9 | -- | 0.589 | -- | -- | -- | 0.0728 | 18.8 | -- | -- | -- | -- |
| 81.27 | 0.42 | 12.9 | -- | -- | 0.487 | -- | -- | -0.0832 | -- | 6.326 | 47520 | -- | -- |
| 90.45 | 0.444 | 12.9 | -- | -- | -- | -- | -- | 0.0627 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 3 | 33.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 6 | 33.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 115 | 34.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 176 | 34.67 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 217 | 34.80 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 314 | 35.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 366 | 35.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 379 | 35.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 403 | 35.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 450 | 35.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 537 | 35.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 618 | 35.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 635 | 35.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 668 | 35.61 | humidity | 50 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 729 | 35.68 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 900 | 35.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 981 | 35.90 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 10 |