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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0498100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0326) R2 : 0.131
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.542 (0.0845) R2dC : 0.0788 R2C : 0.0596
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.369 (0.0685) R2dN8 : 0.0716 R2N8 : 0.0525
σ : 0.614
deviance : 172.15
__
_____
C
peak time of C : 19.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.76 0.596 3.14 -0.319 0.694 -0.722 -0.842 2.35 0.353 18.6 1.136 31 -- --
164.66 0.598 3.12 -0.203 0.662 -0.494 -0.776 -- 0.373 18.8 1.2 25 -- --
161.91 0.593 3.14 -0.305 0.693 -0.723 -- 2.27 0.348 18.5 1.156 25 -- --
165.99 0.6 3.12 -0.19 0.666 -0.519 -- -- 0.374 18.6 1.137 25 -- --
183.81 0.631 3.12 -0.263 -- -0.347 -- 1.78 0.334 -- 1.2 24 -- --
169.87 0.611 3.12 -0.137 0.541 -- -0.847 -- 0.358 19.3 -- -- -- --
171.78 0.614 3.12 -0.118 0.541 -- -- -- 0.356 19.2 -- -- -- --
186.23 0.636 3.1 -0.16 -- -0.19 -- -- 0.356 -- 1.1 23 -- --
166.92 0.602 3.11 -- 0.66 -0.487 -- -- 0.394 18.6 1.142 25 -- --
187.23 0.639 3.11 -0.128 -- -- -- -- 0.347 -- -- -- -- --
172.15 0.614 3.11 -- 0.542 -- -- -- 0.369 19.1 -- -- -- --
186.87 0.637 3.1 -- -- -0.171 -- -- 0.369 -- 1.115 23 -- --
187.66 0.639 3.1 -- -- -- -- -- 0.361 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.85 temperature 25 90 > th dose independent rect. 13 8
4 156.21 temperature 25 10 > th dose independent rect. 15 6
19 158.39 radiation 30 4320 > th dose independent rect. 7 1
34 158.40 radiation 1 270 < th dose dependent sin 19 NA
35 158.43 radiation 30 14400 < th dose independent rect. 16 11
37 158.48 radiation 30 14400 < th dose independent rect. 16 9
38 158.50 radiation 1 270 < th dose independent sin 19 NA
52 158.73 wind 3 43200 > th dose dependent rect. 22 2
53 158.74 wind 5 43200 < th dose independent rect. 22 2
54 158.75 radiation 1 270 > th dose independent sin 19 NA
55 158.76 wind 5 43200 > th dose independent rect. 22 2
57 158.77 wind 3 43200 > th dose dependent rect. 18 11
59 158.83 radiation 30 14400 < th dose independent rect. 16 1
60 158.86 wind 1 30 > th dose independent rect. 21 16
62 158.87 radiation 30 4320 < th dose independent rect. 22 10
64 158.88 wind 5 43200 < th dose independent rect. 18 11
70 158.92 wind 5 43200 < th dose independent rect. 17 16
72 158.93 wind 1 30 < th dose independent rect. 4 20
74 158.94 radiation 30 14400 < th dose independent rect. 16 4
76 158.94 wind 3 43200 > th dose dependent rect. 21 6
81 158.98 wind 5 43200 > th dose independent rect. 18 11
90 159.00 wind 5 43200 > th dose independent rect. 17 16
95 159.03 radiation 10 14400 > th dose dependent rect. 5 1
96 159.03 radiation 30 14400 > th dose dependent rect. 16 1
127 159.06 radiation 30 4320 < th dose independent rect. 6 2
137 159.11 temperature 20 30 > th dose dependent rect. 13 8
138 159.12 wind 5 43200 < th dose independent sin 11 NA
144 159.13 temperature 30 90 < th dose dependent rect. 17 6
148 159.15 wind 5 43200 > th dose independent sin 11 NA
156 159.17 wind 3 43200 > th dose dependent sin 11 NA
157 159.19 radiation 30 4320 < th dose independent rect. 2 6
182 159.28 wind 3 43200 > th dose dependent rect. 17 16
214 159.42 radiation 1 270 < th dose dependent rect. 15 8
217 159.44 wind 9 43200 < th dose dependent rect. 21 6
222 159.46 radiation 1 270 < th dose independent rect. 15 8
226 159.47 wind 5 43200 < th dose independent rect. 21 6
233 159.49 wind 5 43200 > th dose independent rect. 21 6
243 159.55 radiation 30 14400 > th dose independent rect. 16 1
259 159.55 wind 9 43200 < th dose dependent rect. 20 9
263 159.56 wind 7 43200 < th dose independent rect. 20 8
265 159.57 wind 5 43200 < th dose dependent rect. 10 1
291 159.62 humidity 90 30 < th dose independent rect. 13 8
295 159.64 wind 1 30 > th dose independent sin 17 NA
308 159.66 atmosphere 1000 43200 < th dose dependent rect. 6 6
321 159.68 atmosphere 1000 43200 < th dose dependent rect. 7 4
324 159.69 wind 3 43200 < th dose independent rect. 10 1
340 159.71 temperature 30 10 < th dose dependent rect. 17 11
341 159.72 radiation 1 270 > th dose independent rect. 11 8
368 159.74 radiation 30 14400 > th dose dependent rect. 7 1
388 159.75 atmosphere 995 43200 > th dose independent rect. 1 18
401 159.77 wind 5 43200 < th dose independent rect. 7 3
426 159.80 atmosphere 995 43200 < th dose independent rect. 1 18
429 159.80 temperature 20 10 > th dose independent rect. 24 21
441 159.82 wind 5 43200 > th dose independent rect. 7 3
453 159.83 wind 5 43200 > th dose independent rect. 21 13
473 159.85 wind 5 43200 < th dose independent rect. 21 13
491 159.87 radiation 1 270 < th dose independent rect. 7 16
496 159.87 radiation 1 270 < th dose dependent rect. 7 16
506 159.88 radiation 1 270 < th dose dependent rect. 9 14
528 159.89 radiation 1 270 < th dose independent rect. 9 14
556 159.90 atmosphere 995 43200 > th dose independent sin 3 NA
568 159.91 wind 1 30 < th dose independent rect. 13 11
580 159.92 humidity 90 43200 > th dose dependent rect. 12 1
597 159.93 wind 9 43200 < th dose dependent rect. 18 17
609 159.94 temperature 15 90 > th dose dependent rect. 13 17
635 159.97 wind 3 43200 > th dose independent rect. 10 1
640 159.97 wind 9 43200 < th dose dependent sin 11 NA
656 159.98 temperature 20 90 > th dose independent rect. 23 22
658 159.98 radiation 10 14400 < th dose dependent rect. 16 1
695 160.01 temperature 25 270 < th dose independent rect. 16 4
748 160.06 atmosphere 995 43200 < th dose independent rect. 7 19
758 160.07 atmosphere 995 43200 < th dose independent sin 3 NA
760 160.07 temperature 25 90 < th dose independent rect. 17 6
780 160.09 wind 9 43200 > th dose independent rect. 15 17
788 160.10 humidity 90 43200 > th dose independent rect. 12 1
800 160.11 wind 9 43200 < th dose independent rect. 15 18
825 160.13 wind 1 43200 > th dose dependent rect. 2 1
834 160.13 temperature 10 90 > th dose dependent rect. 23 22
854 160.15 wind 1 30 > th dose independent rect. 21 18
867 160.16 wind 9 43200 < th dose independent rect. 16 16
903 160.19 wind 1 43200 > th dose dependent rect. 9 2
908 160.19 radiation 40 4320 < th dose dependent rect. 18 9
917 160.19 wind 9 43200 > th dose dependent rect. 15 16
939 160.21 atmosphere 1000 43200 < th dose dependent rect. 13 1
950 160.22 atmosphere 1000 43200 < th dose dependent sin 0 NA
960 160.23 wind 5 43200 > th dose independent rect. 2 8
988 160.25 wind 5 43200 < th dose independent rect. 1 9
1000 160.26 temperature 20 10 > th dose dependent rect. 15 6