Os10g0497600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os10g0497600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.14 | 0.399 | 7.67 | -1.43 | 0.623 | 1.26 | 1.35 | -3.56 | -0.231 | 20.5 | 26.3 | 901 | -- | -- |
| 74.42 | 0.402 | 7.61 | -0.872 | 0.63 | 0.942 | 0.988 | -- | -0.179 | 20.2 | 25.44 | 939 | -- | -- |
| 74.97 | 0.403 | 7.65 | -1.24 | 0.739 | 1.1 | -- | -1.86 | -0.189 | 19.3 | 26.2 | 1004 | -- | -- |
| 75.54 | 0.405 | 7.6 | -0.876 | 0.763 | 0.914 | -- | -- | -0.143 | 19.4 | 25.6 | 991 | -- | -- |
| 91.18 | 0.445 | 7.65 | -1.42 | -- | 1.63 | -- | -2.79 | -0.309 | -- | 25.02 | 756 | -- | -- |
| 94.76 | 0.456 | 7.6 | -0.61 | 0.918 | -- | 1.31 | -- | -0.0826 | 20.5 | -- | -- | -- | -- |
| 99.44 | 0.467 | 7.59 | -0.646 | 0.934 | -- | -- | -- | -0.0794 | 20 | -- | -- | -- | -- |
| 93.74 | 0.451 | 7.59 | -0.958 | -- | 1.37 | -- | -- | -0.196 | -- | 24.95 | 768 | -- | -- |
| 95.28 | 0.455 | 7.59 | -- | 0.835 | 0.688 | -- | -- | -0.0917 | 19.5 | 26.27 | 1007 | -- | -- |
| 147.07 | 0.567 | 7.57 | -0.655 | -- | -- | -- | -- | -0.0913 | -- | -- | -- | -- | -- |
| 110.45 | 0.492 | 7.58 | -- | 0.938 | -- | -- | -- | -0.00745 | 20 | -- | -- | -- | -- |
| 116.68 | 0.503 | 7.57 | -- | -- | 1.19 | -- | -- | -0.0778 | -- | 25 | 740 | -- | -- |
| 158.4 | 0.587 | 7.55 | -- | -- | -- | -- | -- | -0.0186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.76 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 2 | 67.82 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 9 |
| 3 | 67.90 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 19 |
| 5 | 68.03 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 15 |
| 8 | 68.19 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 10 | 68.31 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 21 |
| 14 | 68.54 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 13 |
| 15 | 68.56 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 19 | 68.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 20 | 68.66 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 26 | 68.75 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 15 |
| 34 | 69.00 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 41 | 69.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 44 | 69.18 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 49 | 69.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 51 | 69.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 64 | 69.45 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 65 | 69.46 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 13 |
| 67 | 69.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 69 | 69.52 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 8 |
| 77 | 69.56 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 21 |
| 91 | 69.77 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 111 | 70.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 118 | 70.12 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 121 | 70.15 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 135 | 70.22 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |
| 166 | 70.44 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 180 | 70.51 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 213 | 70.71 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 223 | 70.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 231 | 70.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 245 | 70.89 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 12 |
| 255 | 70.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 274 | 71.01 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 307 | 71.16 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 344 | 71.29 | temperature | 10 | 90 | > th | dose dependent | rect. | 15 | 14 |
| 359 | 71.39 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 383 | 71.48 | temperature | 20 | 90 | > th | dose dependent | sin | 16 | NA |
| 396 | 71.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 14 |
| 398 | 71.56 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 468 | 71.85 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 496 | 71.91 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 9 |
| 501 | 71.95 | temperature | 25 | 270 | > th | dose independent | sin | 18 | NA |
| 546 | 72.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 574 | 72.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 577 | 72.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 589 | 72.23 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 12 |
| 600 | 72.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 601 | 72.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 628 | 72.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 663 | 72.45 | temperature | 25 | 720 | > th | dose dependent | sin | 20 | NA |
| 717 | 72.58 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 727 | 72.61 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 15 |
| 729 | 72.61 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 816 | 72.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 898 | 73.01 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 941 | 73.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 963 | 73.11 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 10 |