Os10g0497300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os10g0497300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.18 | 0.283 | 7.81 | 0.762 | 0.546 | -0.422 | 0.273 | 1.04 | -0.186 | 23.1 | 48.7 | 10 | -- | -- |
| 36.42 | 0.281 | 7.82 | 0.764 | 0.571 | -0.578 | 0.247 | -- | -0.228 | 23.1 | 52.25 | 86 | -- | -- |
| 36.35 | 0.281 | 7.81 | 0.755 | 0.542 | -0.481 | -- | 0.79 | -0.187 | 23.1 | 50.41 | 9 | -- | -- |
| 36.23 | 0.28 | 7.81 | 0.74 | 0.536 | -0.674 | -- | -- | -0.19 | 23 | 53.77 | 89 | -- | -- |
| 50.95 | 0.332 | 7.79 | 0.778 | -- | -0.974 | -- | 0.343 | -0.116 | -- | 35.53 | 77 | -- | -- |
| 39.28 | 0.294 | 7.8 | 0.805 | 0.601 | -- | 0.0553 | -- | -0.163 | 23.2 | -- | -- | -- | -- |
| 39.3 | 0.294 | 7.8 | 0.803 | 0.601 | -- | -- | -- | -0.163 | 23.2 | -- | -- | -- | -- |
| 41.53 | 0.3 | 7.79 | 0.8 | -- | -0.807 | -- | -- | -0.141 | -- | -6.741 | 49 | -- | -- |
| 50.22 | 0.33 | 7.83 | -- | 0.534 | -0.971 | -- | -- | -0.272 | 23 | 55.46 | 89 | -- | -- |
| 61.83 | 0.367 | 7.79 | 0.817 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 56.29 | 0.351 | 7.82 | -- | 0.608 | -- | -- | -- | -0.252 | 23.3 | -- | -- | -- | -- |
| 58.43 | 0.356 | 7.81 | -- | -- | -0.82 | -- | -- | -0.231 | -- | -1.463 | 49 | -- | -- |
| 79.46 | 0.416 | 7.81 | -- | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.71 | radiation | 20 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 3 | 34.75 | radiation | 20 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 40 | 35.14 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 3 |
| 157 | 35.48 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 1 |
| 348 | 35.98 | radiation | 20 | 10 | > th | dose dependent | sin | 8 | NA |
| 429 | 36.19 | radiation | 40 | 90 | > th | dose dependent | sin | 10 | NA |
| 531 | 36.53 | radiation | 30 | 270 | < th | dose independent | sin | 8 | NA |
| 574 | 36.59 | radiation | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 706 | 36.67 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 17 |
| 715 | 36.69 | radiation | 30 | 10 | > th | dose independent | sin | 8 | NA |
| 716 | 36.69 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 11 |
| 785 | 36.71 | radiation | 40 | 10 | > th | dose dependent | no | NA | NA |
| 951 | 36.71 | radiation | 40 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 969 | 36.73 | radiation | 30 | 270 | > th | dose independent | sin | 8 | NA |
| 970 | 36.73 | radiation | 40 | 10 | < th | dose independent | sin | 9 | NA |