Os10g0495400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os10g0495400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.27 | 0.316 | 10.5 | -1.29 | 0.865 | -0.573 | 0.106 | 0.298 | -0.0541 | 20.6 | 24.92 | 307 | -- | -- |
| 45.24 | 0.313 | 10.5 | -1.26 | 0.841 | -0.627 | 0.0472 | -- | -0.0374 | 20.3 | 23.9 | 478 | -- | -- |
| 45.3 | 0.313 | 10.5 | -1.29 | 0.863 | -0.576 | -- | 0.264 | -0.0527 | 20.5 | 24.9 | 317 | -- | -- |
| 45.23 | 0.313 | 10.5 | -1.25 | 0.848 | -0.634 | -- | -- | -0.0377 | 20.3 | 23.79 | 477 | -- | -- |
| 75.01 | 0.403 | 10.5 | -1.35 | -- | -1.09 | -- | -0.0964 | -0.151 | -- | 29.6 | 579 | -- | -- |
| 50.55 | 0.333 | 10.4 | -1.09 | 0.904 | -- | 0.0209 | -- | 0.0737 | 20.3 | -- | -- | -- | -- |
| 50.55 | 0.333 | 10.4 | -1.09 | 0.904 | -- | -- | -- | 0.0738 | 20.3 | -- | -- | -- | -- |
| 74.94 | 0.403 | 10.5 | -1.38 | -- | -1.11 | -- | -- | -0.156 | -- | 29.68 | 580 | -- | -- |
| 79.81 | 0.416 | 10.4 | -- | 0.903 | 1 | -- | -- | 0.199 | 20.2 | 14.38 | 1291 | -- | -- |
| 95.78 | 0.457 | 10.4 | -1.1 | -- | -- | -- | -- | 0.0638 | -- | -- | -- | -- | -- |
| 81.83 | 0.423 | 10.4 | -- | 0.91 | -- | -- | -- | 0.195 | 20.2 | -- | -- | -- | -- |
| 120.46 | 0.511 | 10.4 | -- | -- | -0.645 | -- | -- | 0.108 | -- | 39.88 | 548 | -- | -- |
| 127.44 | 0.527 | 10.4 | -- | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.69 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 3 | 43.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 14 |
| 6 | 43.14 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 9 | 43.38 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 10 | 43.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 18 | 43.42 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 26 | 43.50 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 30 | 43.51 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 31 | 43.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 32 | 43.52 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 34 | 43.55 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 38 | 43.57 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 49 | 43.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 60 | 43.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 67 | 43.70 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 71 | 43.72 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 78 | 43.76 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 80 | 43.77 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 84 | 43.78 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 99 | 43.84 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 115 | 43.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 17 |
| 116 | 43.88 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 117 | 43.88 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 129 | 43.89 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 152 | 43.93 | wind | 3 | 14400 | < th | dose dependent | sin | 8 | NA |
| 159 | 43.95 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 194 | 44.01 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 197 | 44.01 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 213 | 44.03 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 216 | 44.04 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 225 | 44.05 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 230 | 44.06 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 244 | 44.07 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 287 | 44.11 | wind | 3 | 14400 | < th | dose independent | sin | 9 | NA |
| 298 | 44.12 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 313 | 44.13 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 342 | 44.16 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 351 | 44.17 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 366 | 44.18 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 395 | 44.21 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 423 | 44.23 | wind | 3 | 14400 | > th | dose independent | sin | 9 | NA |
| 441 | 44.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 470 | 44.26 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 496 | 44.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 631 | 44.37 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 694 | 44.41 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 731 | 44.43 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 736 | 44.43 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 767 | 44.45 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 819 | 44.47 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 883 | 44.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 10 |
| 901 | 44.52 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 927 | 44.53 | wind | 1 | 14400 | > th | dose dependent | sin | 8 | NA |
| 939 | 44.54 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 8 | 11 |