Os10g0495200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fertility restorer.
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Os10g0495200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fertility restorer.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.13 | 0.336 | 6.82 | 0.849 | 0.612 | -0.526 | 0.069 | -1.38 | -0.13 | 19 | 30.23 | 317 | -- | -- |
| 51.2 | 0.333 | 6.83 | 0.744 | 0.607 | -0.679 | 0.0878 | -- | -0.128 | 18.8 | 30.2 | 439 | -- | -- |
| 51 | 0.333 | 6.81 | 0.899 | 0.601 | -0.474 | -- | -1.96 | -0.131 | 18.8 | 30.23 | 439 | -- | -- |
| 51.2 | 0.333 | 6.83 | 0.737 | 0.597 | -0.7 | -- | -- | -0.128 | 18.9 | 30.2 | 423 | -- | -- |
| 62.32 | 0.368 | 6.82 | 0.858 | -- | -0.821 | -- | -1.36 | -0.231 | -- | 28.62 | 501 | -- | -- |
| 60.93 | 0.366 | 6.85 | 0.838 | 0.812 | -- | 0.531 | -- | -0.183 | 18.6 | -- | -- | -- | -- |
| 61.64 | 0.368 | 6.85 | 0.829 | 0.814 | -- | -- | -- | -0.182 | 18.7 | -- | -- | -- | -- |
| 63.12 | 0.37 | 6.84 | 0.67 | -- | -1.01 | -- | -- | -0.237 | -- | 29.3 | 502 | -- | -- |
| 64.94 | 0.375 | 6.85 | -- | 0.531 | -0.812 | -- | -- | -0.22 | 19.1 | 30 | 412 | -- | -- |
| 96.23 | 0.458 | 6.83 | 0.81 | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
| 79.77 | 0.418 | 6.87 | -- | 0.804 | -- | -- | -- | -0.274 | 18.7 | -- | -- | -- | -- |
| 74.61 | 0.402 | 6.85 | -- | -- | -1.12 | -- | -- | -0.275 | -- | 29.5 | 505 | -- | -- |
| 113.54 | 0.497 | 6.85 | -- | -- | -- | -- | -- | -0.288 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 2 | 49.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 3 | 49.19 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 5 | 49.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 6 | 49.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 8 | 49.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 96 | 50.13 | temperature | 25 | 4320 | < th | dose independent | sin | 10 | NA |
| 101 | 50.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 104 | 50.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 112 | 50.22 | temperature | 25 | 4320 | > th | dose independent | sin | 10 | NA |
| 123 | 50.27 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 5 |
| 158 | 50.41 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 182 | 50.54 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 198 | 50.54 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 204 | 50.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 16 |
| 209 | 50.59 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 231 | 50.69 | temperature | 20 | 720 | > th | dose dependent | sin | 2 | NA |
| 247 | 50.74 | temperature | 15 | 720 | > th | dose dependent | sin | 0 | NA |
| 262 | 50.78 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 6 |
| 300 | 50.88 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 11 |
| 388 | 50.99 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 394 | 51.00 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 23 |
| 403 | 51.01 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 13 |
| 406 | 51.01 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 416 | 51.03 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 483 | 51.07 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 499 | 51.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 588 | 51.17 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 591 | 51.18 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 596 | 51.19 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 619 | 51.22 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 633 | 51.23 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 635 | 51.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 637 | 51.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 643 | 51.24 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 655 | 51.25 | temperature | 30 | 270 | > th | dose independent | sin | 21 | NA |
| 661 | 51.25 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 662 | 51.25 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 730 | 51.27 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 21 |
| 801 | 51.31 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 802 | 51.31 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 804 | 51.31 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 15 |
| 825 | 51.33 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 969 | 51.36 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 23 |