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Os10g0493100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pentatricopeptide repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.91 (0.02) R2 : 0.186
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.429 (0.042) R2dN8 : 0.24 R2N8 : 0.186
σ : 0.376
deviance : 64.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.14 0.275 7.86 0.82 0.424 0.455 -0.437 1.38 0.507 0.331 19.7 4832 -- --
35.96 0.279 7.91 0.683 0.408 0.175 -0.265 -- 0.456 0.458 22.04 3765 -- --
34.92 0.275 7.85 0.828 0.426 0.474 -- 1.42 0.509 0.242 19.42 4792 -- --
36.37 0.281 7.9 0.758 0.431 0.331 -- -- 0.517 0.151 35.7 4971 -- --
46.24 0.317 7.84 0.824 -- 0.535 -- 1.51 0.514 -- 19.4 5115 -- --
36.54 0.283 7.9 0.744 0.432 -- -0.42 -- 0.506 0.314 -- -- -- --
37.29 0.286 7.9 0.761 0.433 -- -- -- 0.508 0.227 -- -- -- --
46.45 0.317 7.91 0.814 -- 0.351 -- -- 0.484 -- 24.9 2371 -- --
36.37 0.281 7.93 -- 0.43 0.547 -- -- 0.385 0.297 34.77 47520 -- --
49.1 0.327 7.89 0.775 -- -- -- -- 0.515 -- -- -- -- --
52.54 0.339 7.92 -- 0.444 -- -- -- 0.423 0.319 -- -- -- --
47.97 0.323 7.92 -- -- 0.553 -- -- 0.367 -- 34.36 47520 -- --
64.93 0.376 7.91 -- -- -- -- -- 0.429 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.01 wind 1.0 43200 > th dose independent rect. 7 1
2 33.01 wind 1.0 43200 < th dose dependent rect. 7 6
3 33.03 precipitation 0.1 43200 > th dose dependent rect. 19 1
5 33.08 wind 1.0 43200 < th dose independent rect. 7 1
6 33.11 temperature 25.0 43200 > th dose dependent rect. 1 1
7 33.12 humidity 50.0 43200 < th dose independent rect. 14 1
8 33.12 wind 1.0 43200 < th dose dependent rect. 7 4
10 33.14 wind 1.0 43200 < th dose dependent rect. 7 2
13 33.15 humidity 90.0 43200 < th dose dependent rect. 24 1
14 33.16 radiation 20.0 43200 > th dose independent rect. 16 1
15 33.16 atmosphere 1015.0 43200 > th dose independent rect. 21 2
16 33.16 atmosphere 1015.0 43200 < th dose independent rect. 21 2
32 33.16 temperature 25.0 270 > th dose dependent rect. 5 1
36 33.17 wind 1.0 43200 > th dose independent rect. 5 4
47 33.18 wind 1.0 43200 < th dose independent rect. 6 7
52 33.19 wind 1.0 43200 > th dose independent rect. 6 7
83 33.23 temperature 25.0 43200 > th dose dependent rect. 23 5
85 33.24 atmosphere 1010.0 14400 > th dose independent rect. 12 1
93 33.24 temperature 25.0 43200 > th dose dependent rect. 3 1
94 33.24 temperature 25.0 43200 > th dose dependent rect. 23 1
95 33.24 temperature 25.0 43200 > th dose dependent rect. 23 3
111 33.25 atmosphere 1000.0 90 < th dose dependent rect. 7 2
113 33.25 wind 1.0 43200 < th dose dependent rect. 5 4
147 33.27 wind 1.0 43200 > th dose independent rect. 6 22
151 33.27 wind 1.0 43200 < th dose dependent rect. 6 21
152 33.28 humidity 50.0 43200 > th dose independent rect. 14 1
154 33.28 wind 1.0 43200 > th dose independent rect. 23 3
165 33.28 atmosphere 1010.0 43200 > th dose dependent rect. 12 1
169 33.29 atmosphere 1015.0 43200 < th dose independent sin 13 NA
193 33.29 atmosphere 1015.0 43200 < th dose independent rect. 10 14
194 33.29 wind 3.0 14400 < th dose dependent rect. 24 1
198 33.29 wind 1.0 43200 < th dose dependent rect. 11 2
207 33.30 atmosphere 1015.0 43200 > th dose independent rect. 1 1
232 33.30 atmosphere 1010.0 43200 > th dose dependent rect. 2 1
237 33.30 wind 3.0 14400 < th dose dependent rect. 20 6
244 33.31 atmosphere 1015.0 43200 > th dose independent rect. 10 1
246 33.31 atmosphere 1015.0 43200 < th dose independent rect. 10 1
304 33.31 wind 1.0 43200 < th dose independent rect. 6 22
318 33.32 atmosphere 1015.0 43200 > th dose independent sin 11 NA
389 33.32 wind 9.0 4320 > th dose dependent rect. 13 1
392 33.32 atmosphere 1010.0 43200 > th dose dependent rect. 23 1
405 33.32 atmosphere 1010.0 43200 > th dose dependent rect. 23 6
419 33.33 wind 9.0 4320 > th dose independent rect. 13 1
420 33.33 atmosphere 1015.0 43200 < th dose independent rect. 1 1
422 33.33 precipitation 0.1 43200 > th dose independent rect. 23 1
443 33.33 atmosphere 1015.0 43200 > th dose independent rect. 10 17
483 33.33 precipitation 0.1 43200 > th dose dependent rect. 23 1
488 33.33 atmosphere 1010.0 43200 > th dose dependent rect. 23 4
509 33.33 atmosphere 1010.0 43200 > th dose dependent rect. 2 11
517 33.33 atmosphere 1010.0 43200 > th dose dependent rect. 23 13
536 33.33 wind 1.0 43200 < th dose dependent rect. 6 17
559 33.34 atmosphere 1015.0 43200 < th dose independent no NA NA
560 33.34 atmosphere 1010.0 14400 < th dose independent rect. 17 1
579 33.34 atmosphere 1015.0 43200 > th dose independent rect. 10 14
610 33.34 wind 1.0 43200 > th dose independent rect. 6 20
668 33.34 atmosphere 1010.0 43200 > th dose dependent sin 7 NA
671 33.34 atmosphere 1010.0 43200 > th dose dependent sin 23 NA
679 33.34 atmosphere 1010.0 43200 > th dose dependent no NA NA
680 33.34 atmosphere 1010.0 43200 > th dose dependent rect. 18 1
705 33.34 atmosphere 1010.0 43200 > th dose dependent rect. 5 8
709 33.34 atmosphere 1010.0 43200 > th dose dependent rect. 2 9
758 33.34 atmosphere 1010.0 43200 > th dose dependent rect. 10 17
788 33.34 atmosphere 1010.0 43200 > th dose dependent rect. 16 21
792 33.34 atmosphere 1010.0 43200 > th dose dependent rect. 2 22
864 33.35 wind 1.0 43200 < th dose independent rect. 6 20
897 33.35 atmosphere 1010.0 43200 > th dose dependent sin 20 NA
902 33.35 atmosphere 1010.0 43200 > th dose dependent rect. 16 1
936 33.35 atmosphere 1010.0 43200 > th dose dependent rect. 18 11
940 33.35 atmosphere 1010.0 43200 > th dose dependent rect. 16 12