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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0492600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tonoplast membrane integral protein ZmTIP3-1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0168) R2 : 0.000299
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0131 (0.0354) R2dN8 : 0.000387 R2N8 : 0.000299
σ : 0.317
deviance : 46.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.58 0.307 3.16 0.0438 0.163 0.0553 0.153 4.57 -0.00623 7.61 0.4157 10 -- --
42.6 0.304 3.16 0.0356 0.16 1.38 0.141 -- -0.00518 7.55 0.3053 2 -- --
42.63 0.304 3.16 0.0477 0.163 -0.0461 -- 4.94 -0.00655 7.3 0.445 9 -- --
42.65 0.304 3.16 0.0395 0.162 1.38 -- -- -0.00686 7.3 0.346 2 -- --
44.03 0.309 3.16 0.0557 -- -0.0319 -- 5.06 -0.00417 -- 0.6424 9 -- --
44.49 0.313 3.16 0.0529 0.167 -- 0.147 -- -0.00909 7.31 -- -- -- --
44.55 0.313 3.16 0.0556 0.169 -- -- -- -0.00959 7.08 -- -- -- --
44.03 0.31 3.17 0.0448 -- 1.42 -- -- -0.00414 -- 0.6451 3 -- --
42.69 0.304 3.16 -- 0.162 1.39 -- -- -0.011 7.29 0.3201 2 -- --
46.04 0.317 3.17 0.0589 -- -- -- -- -0.00656 -- -- -- -- --
44.63 0.312 3.16 -- 0.169 -- -- -- -0.0158 7.06 -- -- -- --
44.08 0.309 3.17 -- -- 1.44 -- -- -0.00879 -- 0.4445 2 -- --
46.14 0.317 3.17 -- -- -- -- -- -0.0131 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.08 radiation 1.0 720 < th dose independent rect. 9 4
2 41.08 radiation 1.0 720 < th dose dependent rect. 9 4
9 41.14 radiation 1.0 720 > th dose independent rect. 7 8
26 41.27 humidity 90.0 90 < th dose independent rect. 2 5
27 41.29 radiation 1.0 720 < th dose independent rect. 13 1
29 41.29 radiation 1.0 720 < th dose dependent rect. 13 1
31 41.30 humidity 90.0 720 > th dose independent rect. 12 1
34 41.30 humidity 90.0 720 > th dose dependent rect. 12 1
49 41.50 humidity 90.0 1440 < th dose independent rect. 1 2
62 41.69 radiation 1.0 720 > th dose independent rect. 14 1
69 41.74 temperature 25.0 90 > th dose dependent rect. 1 5
74 41.79 wind 1.0 14400 > th dose dependent rect. 11 1
75 41.80 wind 7.0 14400 < th dose dependent rect. 11 1
77 41.81 precipitation 0.1 10 < th dose independent rect. 3 23
78 41.81 precipitation 0.1 10 < th dose dependent rect. 3 23
83 41.86 radiation 1.0 720 < th dose dependent rect. 9 18
84 41.87 radiation 1.0 720 < th dose dependent rect. 11 16
100 41.93 humidity 90.0 90 < th dose dependent rect. 2 5
101 41.93 humidity 80.0 14400 < th dose dependent rect. 21 12
116 42.01 atmosphere 995.0 720 > th dose independent rect. 7 8
131 42.10 atmosphere 1000.0 30 > th dose independent rect. 3 23
132 42.10 precipitation 0.1 10 < th dose independent rect. 7 23
135 42.10 precipitation 0.1 10 < th dose dependent rect. 7 23
136 42.11 temperature 25.0 90 > th dose independent rect. 1 6
139 42.12 wind 5.0 14400 < th dose independent rect. 11 2
140 42.12 atmosphere 1005.0 90 > th dose dependent rect. 2 1
141 42.12 atmosphere 1005.0 10 > th dose dependent rect. 2 2
151 42.14 radiation 1.0 1440 > th dose independent rect. 9 1
152 42.14 wind 3.0 14400 > th dose independent rect. 10 3
158 42.15 wind 9.0 14400 > th dose dependent rect. 13 1
160 42.15 radiation 1.0 720 < th dose dependent rect. 9 12
167 42.17 radiation 1.0 720 < th dose dependent rect. 11 10
169 42.18 atmosphere 1005.0 90 < th dose independent rect. 19 2
170 42.19 atmosphere 1005.0 10 < th dose independent rect. 19 1
181 42.21 humidity 90.0 1440 < th dose dependent rect. 24 1
184 42.22 temperature 25.0 720 > th dose independent rect. 1 1
194 42.24 wind 9.0 14400 > th dose independent rect. 13 1
195 42.24 atmosphere 1000.0 90 > th dose independent rect. 7 23
200 42.25 humidity 80.0 1440 > th dose independent rect. 23 4
201 42.25 wind 5.0 14400 < th dose independent rect. 10 5
202 42.25 wind 9.0 720 < th dose independent rect. 19 8
203 42.25 radiation 1.0 720 < th dose independent rect. 11 16
204 42.25 radiation 1.0 720 < th dose independent rect. 9 18
209 42.26 wind 5.0 14400 > th dose independent rect. 10 5
220 42.28 radiation 1.0 1440 > th dose independent rect. 11 1
223 42.29 wind 9.0 14400 < th dose independent rect. 13 1
224 42.29 temperature 25.0 1440 < th dose independent rect. 1 1
226 42.29 radiation 1.0 720 < th dose dependent sin 21 NA
228 42.30 humidity 90.0 1440 > th dose independent rect. 2 1
233 42.30 radiation 1.0 43200 < th dose dependent rect. 3 1
235 42.30 humidity 80.0 14400 < th dose dependent rect. 4 4
268 42.34 humidity 90.0 14400 < th dose dependent rect. 24 4
276 42.36 humidity 80.0 14400 > th dose independent rect. 22 5
279 42.36 precipitation 0.1 10 < th dose independent rect. 18 12
287 42.36 precipitation 0.1 10 < th dose dependent rect. 18 12
293 42.37 radiation 1.0 720 > th dose independent rect. 7 12
303 42.37 atmosphere 1000.0 10 > th dose independent rect. 8 22
315 42.38 humidity 90.0 14400 < th dose dependent rect. 1 2
319 42.39 precipitation 0.1 10 < th dose independent sin 6 NA
327 42.39 radiation 1.0 720 < th dose independent rect. 9 12
330 42.39 precipitation 0.1 10 < th dose dependent sin 6 NA
342 42.40 temperature 10.0 720 > th dose independent rect. 19 8
343 42.40 temperature 30.0 720 < th dose independent rect. 19 8
344 42.40 humidity 50.0 720 > th dose independent rect. 19 8
345 42.40 atmosphere 995.0 720 > th dose independent rect. 19 8
346 42.40 radiation 1.0 720 < th dose independent rect. 19 8
351 42.40 temperature 10.0 720 > th dose independent rect. 3 16
358 42.40 radiation 1.0 720 < th dose dependent rect. 19 8
365 42.41 wind 3.0 30 > th dose independent rect. 6 1
370 42.41 temperature 25.0 30 > th dose dependent rect. 6 1
384 42.42 radiation 1.0 720 < th dose independent rect. 11 10
396 42.43 temperature 10.0 720 > th dose independent rect. 7 8
397 42.43 atmosphere 1015.0 720 < th dose independent rect. 7 8
399 42.43 temperature 10.0 720 > th dose independent rect. 15 16
428 42.45 radiation 1.0 720 > th dose independent sin 20 NA
448 42.46 humidity 80.0 14400 > th dose independent rect. 21 11
458 42.47 atmosphere 1010.0 30 < th dose independent rect. 6 1
496 42.49 radiation 1.0 1440 > th dose independent rect. 9 4
540 42.51 radiation 10.0 30 < th dose independent rect. 6 1
556 42.51 precipitation 0.1 90 > th dose dependent rect. 23 12
573 42.52 radiation 40.0 720 < th dose independent rect. 15 16
580 42.52 humidity 90.0 10 > th dose dependent rect. 18 4
599 42.53 wind 7.0 14400 < th dose independent rect. 5 10
630 42.54 radiation 1.0 4320 < th dose dependent rect. 3 1
638 42.55 wind 1.0 30 < th dose independent rect. 2 1
653 42.55 wind 9.0 720 < th dose independent rect. 15 16
655 42.55 atmosphere 1010.0 30 < th dose dependent rect. 6 1
669 42.55 precipitation 0.1 90 > th dose dependent rect. 3 8
682 42.56 precipitation 0.1 90 > th dose independent rect. 1 10
683 42.56 humidity 80.0 14400 < th dose independent rect. 21 11
709 42.56 precipitation 0.1 90 > th dose dependent rect. 23 7
718 42.57 precipitation 0.1 10 > th dose independent rect. 23 5
723 42.57 radiation 1.0 720 > th dose independent rect. 12 7
733 42.57 wind 7.0 14400 > th dose independent rect. 5 10
751 42.57 precipitation 0.1 10 > th dose dependent rect. 22 6
765 42.57 radiation 1.0 720 < th dose dependent rect. 1 20
766 42.58 radiation 1.0 720 < th dose independent sin 21 NA
767 42.58 wind 3.0 10 > th dose independent rect. 4 1
779 42.58 precipitation 0.1 90 > th dose independent rect. 3 8
780 42.58 radiation 1.0 720 > th dose independent rect. 10 9
782 42.58 precipitation 0.1 10 < th dose independent rect. 21 9
804 42.58 precipitation 0.1 10 > th dose dependent sin 7 NA
806 42.58 wind 3.0 10 > th dose dependent rect. 4 1
808 42.58 wind 3.0 30 < th dose dependent rect. 2 1
831 42.58 precipitation 0.1 10 < th dose dependent rect. 21 9
853 42.59 precipitation 0.1 10 > th dose independent sin 7 NA
857 42.59 wind 9.0 1440 < th dose independent rect. 3 1
858 42.59 temperature 10.0 1440 > th dose independent rect. 3 1
861 42.59 temperature 30.0 1440 < th dose independent rect. 3 1
865 42.59 humidity 50.0 1440 > th dose independent rect. 3 1
874 42.59 atmosphere 1005.0 30 > th dose independent rect. 2 1
875 42.59 atmosphere 995.0 1440 > th dose independent rect. 3 1
876 42.59 radiation 1.0 1440 < th dose independent rect. 3 1
921 42.59 atmosphere 1015.0 720 < th dose independent rect. 3 16
928 42.59 temperature 10.0 1440 > th dose independent rect. 4 23
985 42.60 precipitation 0.1 10 > th dose independent rect. 1 3
989 42.60 precipitation 0.1 90 > th dose independent rect. 1 5