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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0492400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.94 (0.0394) R2 : 0.228
β1 : -1.5 (0.147) R2dD : 0.189 R2D : 0.122
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.1 (0.15) R2dE : 0.0964 R2E : 0.044
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.125 (0.0845) R2dN8 : 0.00498 R2N8 : -0.00154
σ : 0.737
deviance : 250.51
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 77.23
memory length : 1281
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
248.69 0.741 3.94 -1.51 0.00578 1.1 0.714 0.183 -0.122 9.68 77.19 1294 -- --
248.63 0.734 3.94 -1.53 0.0238 1.11 0.717 -- -0.129 9.3 77.15 1271 -- --
250.31 0.737 3.94 -1.52 0.0644 1.08 -- -0.0479 -0.126 4.56 77 1280 -- --
250.29 0.737 3.94 -1.5 0.0655 1.09 -- -- -0.126 4.48 77 1281 -- --
250.51 0.737 3.94 -1.5 -- 1.1 -- 0.00636 -0.124 -- 77.22 1281 -- --
277.43 0.781 3.95 -1.31 0.204 -- -0.252 -- -0.187 1.69 -- -- -- --
277.61 0.78 3.95 -1.3 0.209 -- -- -- -0.186 2.32 -- -- -- --
250.51 0.737 3.94 -1.5 -- 1.1 -- -- -0.125 -- 77.23 1281 -- --
287.89 0.79 3.94 -- 0.0781 1.09 -- -- -0.138 4.32 73.39 28511 -- --
280.21 0.782 3.95 -1.29 -- -- -- -- -0.181 -- -- -- -- --
322.39 0.84 3.92 -- 0.184 -- -- -- -0.041 2.19 -- -- -- --
283.03 0.784 3.92 -- -- 1.38 -- -- -0.0375 -- 68 26986 -- --
324.42 0.841 3.92 -- -- -- -- -- -0.0374 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.69 radiation 30 4320 > th dose independent rect. 16 16
2 247.60 humidity 70 720 < th dose independent rect. 17 2
3 247.64 humidity 80 1440 < th dose dependent rect. 15 3
17 248.18 radiation 30 4320 > th dose independent rect. 7 1
35 248.45 radiation 10 1440 > th dose independent sin 14 NA
45 248.62 humidity 70 1440 < th dose dependent rect. 15 17
59 248.67 humidity 70 1440 < th dose dependent sin 14 NA
61 248.70 humidity 70 1440 < th dose independent sin 13 NA
128 249.13 radiation 10 1440 > th dose independent rect. 15 15
129 249.13 radiation 10 1440 > th dose independent rect. 11 22
131 249.15 radiation 10 1440 < th dose independent rect. 15 2
134 249.18 humidity 80 1440 < th dose dependent sin 17 NA
142 249.24 radiation 10 1440 > th dose independent rect. 15 3
172 249.27 humidity 80 1440 < th dose dependent rect. 12 21
193 249.44 humidity 60 1440 > th dose independent rect. 13 6
195 249.49 radiation 1 1440 > th dose dependent rect. 16 2
198 249.53 radiation 40 1440 < th dose dependent rect. 16 2
200 249.55 humidity 60 1440 > th dose independent sin 15 NA
203 249.56 radiation 10 1440 > th dose independent rect. 13 20
207 249.59 humidity 60 1440 > th dose independent rect. 13 11
208 249.59 humidity 60 1440 > th dose independent rect. 13 14
218 249.61 humidity 60 1440 > th dose independent rect. 13 18
230 249.67 radiation 40 1440 < th dose dependent rect. 16 11
264 249.82 radiation 40 1440 < th dose dependent rect. 16 9
322 249.99 humidity 70 720 > th dose independent rect. 17 6
386 250.15 humidity 70 720 > th dose independent rect. 17 14
390 250.16 humidity 60 1440 < th dose independent rect. 13 6
395 250.20 radiation 20 4320 > th dose dependent rect. 6 2
483 250.29 humidity 70 1440 > th dose independent rect. 16 11
492 250.31 humidity 70 1440 > th dose independent rect. 16 8
498 250.32 humidity 70 1440 > th dose independent rect. 16 4
509 250.33 humidity 50 1440 > th dose dependent rect. 12 7
541 250.42 radiation 20 1440 < th dose dependent sin 14 NA
544 250.42 humidity 50 1440 > th dose dependent rect. 15 4
548 250.43 radiation 10 1440 > th dose independent rect. 15 23
624 250.63 humidity 80 1440 < th dose dependent rect. 6 15
710 250.79 radiation 10 1440 < th dose independent rect. 15 12
745 250.84 radiation 10 1440 < th dose independent rect. 15 10
758 250.85 radiation 10 1440 > th dose independent rect. 8 23
849 250.96 wind 3 14400 < th dose dependent rect. 14 1
878 250.99 temperature 30 1440 > th dose independent rect. 16 3
891 250.99 temperature 30 1440 < th dose independent rect. 16 15
905 251.01 temperature 30 1440 < th dose independent rect. 16 11
924 251.04 temperature 30 1440 < th dose independent rect. 16 3
943 251.06 temperature 30 1440 < th dose independent rect. 16 9
962 251.08 humidity 80 1440 < th dose dependent rect. 15 23
977 251.12 humidity 80 1440 < th dose dependent no NA NA
982 251.15 radiation 10 1440 > th dose independent no NA NA
993 251.15 radiation 10 1440 > th dose independent rect. 5 13