Os10g0492200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF563 family protein.
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Os10g0492200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF563 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.91 | 0.253 | 11.9 | 0.446 | 0.41 | -1.25 | 1.15 | -0.331 | 0.356 | 4.36 | 0.6 | 1470 | -- | -- |
| 28.95 | 0.251 | 11.9 | 0.405 | 0.409 | -1.18 | 1.14 | -- | 0.353 | 4.44 | 0.5999 | 1467 | -- | -- |
| 32.44 | 0.265 | 11.9 | 0.437 | 0.408 | -1.26 | -- | -0.37 | 0.356 | 4.7 | 0.5594 | 1458 | -- | -- |
| 32.48 | 0.265 | 12 | 0.404 | 0.409 | -1.19 | -- | -- | 0.34 | 4.66 | 0.6462 | 1460 | -- | -- |
| 40.43 | 0.296 | 12 | 0.478 | -- | -1.27 | -- | -0.592 | 0.364 | -- | 0.5807 | 1433 | -- | -- |
| 43.1 | 0.308 | 11.9 | 0.697 | 0.387 | -- | 1.24 | -- | 0.494 | 4.78 | -- | -- | -- | -- |
| 46.99 | 0.321 | 11.9 | 0.693 | 0.401 | -- | -- | -- | 0.488 | 5.26 | -- | -- | -- | -- |
| 40.66 | 0.297 | 12 | 0.411 | -- | -1.17 | -- | -- | 0.345 | -- | 0.67 | 1433 | -- | -- |
| 36.11 | 0.28 | 12 | -- | 0.415 | -1.39 | -- | -- | 0.28 | 4.58 | 0.5564 | 1458 | -- | -- |
| 55.39 | 0.348 | 11.9 | 0.707 | -- | -- | -- | -- | 0.498 | -- | -- | -- | -- | -- |
| 59.64 | 0.361 | 11.9 | -- | 0.413 | -- | -- | -- | 0.411 | 5.2 | -- | -- | -- | -- |
| 44.54 | 0.311 | 12 | -- | -- | -1.38 | -- | -- | 0.285 | -- | 0.5702 | 1433 | -- | -- |
| 68.58 | 0.387 | 11.9 | -- | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 2 | 28.99 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 4 | 29.01 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 6 | 29.08 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 8 | 29.17 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 9 | 29.17 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 10 | 29.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 12 | 29.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 17 | 29.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 23 | 29.26 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 24 | 29.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 25 | 29.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 32 | 29.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 35 | 29.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 36 | 29.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 66 | 29.30 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 87 | 29.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 88 | 29.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 89 | 29.33 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 91 | 29.36 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 108 | 29.40 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 139 | 29.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 160 | 29.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 170 | 29.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 180 | 29.68 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 185 | 29.69 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 190 | 29.70 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 195 | 29.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 218 | 29.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 232 | 29.80 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 235 | 29.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 21 |
| 271 | 29.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 284 | 29.91 | wind | 7 | 43200 | > th | dose independent | sin | 17 | NA |
| 293 | 29.93 | wind | 7 | 43200 | < th | dose independent | sin | 17 | NA |
| 323 | 29.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 351 | 30.03 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 389 | 30.08 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 400 | 30.10 | wind | 5 | 43200 | > th | dose dependent | sin | 17 | NA |
| 406 | 30.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 416 | 30.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 422 | 30.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 435 | 30.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 448 | 30.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 516 | 30.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 554 | 30.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 565 | 30.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 574 | 30.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 612 | 30.28 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 626 | 30.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 644 | 30.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 698 | 30.30 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 740 | 30.33 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 745 | 30.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 793 | 30.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 808 | 30.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 831 | 30.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 19 |
| 855 | 30.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 896 | 30.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 919 | 30.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 934 | 30.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 949 | 30.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 974 | 30.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 975 | 30.63 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |