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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0491400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.81 (0.0589) R2 : 0.187
β1 : 1.68 (0.257) R2dD : 0.122 R2D : -0.0525
β2 : 0.629 (0.148) R2dC : 0.0322 R2C : 0.0397
β3 : 0.305 (0.283) R2dE : 0.00351 R2E : 0.0172
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.94 (1.33) R2dD*E : 0.184 R2D*E : 0.0235
γ1 : 0.296 (0.154) R2dN8 : 0.0142 R2N8 : -0.00888
σ : 1.06
deviance : 514.99
__
_____
C
peak time of C : 5.82
E
wheather : radiation
threshold : 10.02
memory length : 4403
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 15.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
514.85 1.07 3.8 1.65 0.617 0.317 0.519 9.89 0.294 5.94 10 4384 16 16
580.48 1.12 3.78 0.79 0.765 0.706 1.02 -- 0.0274 5.43 10.36 11549 15.6 16.5
514.99 1.06 3.81 1.68 0.629 0.305 -- 9.94 0.296 5.82 10.02 4403 16 15.9
575.12 1.12 3.76 0.688 0.792 0.708 -- -- 0.193 5.18 1.26 13613 16.3 16.3
534.88 1.08 3.81 1.71 -- 0.352 -- 10 0.306 -- 10.02 4392 16.1 15.9
600.06 1.15 3.78 0.495 0.688 -- 0.702 -- 0.106 5.61 -- -- -- --
601.26 1.15 3.78 0.498 0.692 -- -- -- 0.103 5.54 -- -- -- --
595.02 1.14 3.73 0.606 -- 0.716 -- -- 0.183 -- 1.258 14460 16.5 16.5
565.6 1.11 3.74 -- 0.743 0.798 -- -- 0.0107 5.2 1.001 36909 16.9 15.6
626.13 1.17 3.79 0.521 -- -- -- -- 0.119 -- -- -- -- --
607.81 1.15 3.79 -- 0.7 -- -- -- 0.0471 5.51 -- -- -- --
573.57 1.12 3.93 -- -- 1.52 -- -- -0.456 -- 1.638 47520 14.8 14.9
633.29 1.17 3.8 -- -- -- -- -- 0.0616 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 519.28 radiation 10 4320 > th dose independent rect. 16 16
3 522.99 wind 1 4320 < th dose dependent rect. 6 1
5 525.02 radiation 10 4320 > th dose dependent rect. 6 1
6 525.36 radiation 10 4320 > th dose dependent rect. 17 14
7 525.43 temperature 30 4320 > th dose dependent rect. 8 1
35 527.54 radiation 10 4320 > th dose independent rect. 6 1
48 528.31 radiation 10 4320 > th dose independent sin 12 NA
49 529.99 radiation 10 4320 < th dose independent rect. 17 15
65 530.92 temperature 30 4320 > th dose independent rect. 8 1
82 532.64 radiation 10 4320 > th dose dependent rect. 16 16
84 532.70 radiation 10 4320 < th dose independent rect. 13 19
86 532.86 radiation 10 4320 < th dose independent rect. 11 22
89 533.07 temperature 30 4320 < th dose independent rect. 8 1
103 533.16 radiation 10 4320 < th dose independent sin 12 NA
106 533.29 radiation 10 4320 < th dose independent rect. 3 5
107 533.29 radiation 10 4320 < th dose independent rect. 1 7
109 533.31 radiation 10 4320 < th dose independent rect. 5 3
112 533.35 radiation 10 4320 < th dose independent rect. 23 9
139 534.59 radiation 10 4320 < th dose independent rect. 17 21
147 535.37 radiation 40 4320 < th dose dependent rect. 3 3
149 535.82 temperature 30 4320 < th dose independent rect. 3 6
151 535.96 radiation 40 4320 < th dose dependent rect. 19 11
152 535.99 radiation 40 4320 < th dose dependent rect. 1 5
156 536.22 radiation 1 4320 > th dose dependent rect. 17 1
158 536.24 radiation 40 4320 < th dose dependent rect. 23 7
162 536.40 temperature 30 4320 < th dose independent rect. 5 4
175 536.55 radiation 40 4320 < th dose dependent rect. 17 14
189 536.99 radiation 20 4320 < th dose dependent rect. 17 1
204 537.31 radiation 10 4320 < th dose independent rect. 5 9
205 537.32 radiation 10 4320 < th dose independent rect. 3 11
206 537.32 radiation 10 4320 < th dose independent rect. 1 13
209 537.33 radiation 10 4320 < th dose independent rect. 23 15
220 537.46 radiation 10 4320 < th dose independent sin 6 NA
245 537.79 radiation 10 4320 < th dose independent rect. 13 23
253 537.87 radiation 40 4320 < th dose dependent rect. 16 16
257 537.97 radiation 10 4320 < th dose independent rect. 5 13
259 538.00 radiation 10 4320 < th dose independent rect. 3 15
260 538.00 radiation 10 4320 < th dose independent rect. 1 17
265 538.00 radiation 10 4320 < th dose independent rect. 5 23
266 538.00 radiation 10 4320 < th dose independent rect. 19 23
267 538.01 radiation 10 4320 < th dose independent rect. 5 15
270 538.01 radiation 10 4320 < th dose independent rect. 5 19
284 538.03 radiation 10 4320 > th dose dependent sin 12 NA
294 538.05 radiation 10 4320 < th dose independent no NA NA
334 538.15 temperature 30 4320 < th dose independent rect. 19 14
337 538.20 wind 7 43200 > th dose independent rect. 18 1
344 538.39 temperature 30 4320 < th dose independent rect. 23 10
372 538.48 humidity 80 14400 > th dose dependent rect. 5 2
374 538.51 radiation 40 4320 < th dose independent rect. 14 19
395 538.73 temperature 30 4320 < th dose independent rect. 1 8
420 539.04 radiation 20 4320 < th dose dependent sin 12 NA
426 539.35 radiation 20 4320 < th dose dependent rect. 14 19
435 539.58 radiation 20 4320 < th dose dependent rect. 11 22
458 539.87 wind 1 1440 < th dose dependent rect. 6 6
480 540.05 wind 7 43200 < th dose independent rect. 18 1
539 540.50 wind 1 14400 < th dose dependent rect. 23 3
561 540.87 radiation 40 4320 < th dose dependent rect. 17 3
655 541.93 humidity 90 14400 < th dose dependent rect. 6 1
659 542.03 radiation 40 4320 < th dose independent rect. 14 6
661 542.06 radiation 40 4320 < th dose independent rect. 14 12
662 542.07 radiation 40 4320 < th dose independent rect. 14 2
663 542.07 wind 1 14400 < th dose independent rect. 23 3
696 542.34 wind 1 1440 < th dose independent rect. 6 4
698 542.44 humidity 60 43200 > th dose independent rect. 20 13
721 542.84 wind 1 1440 < th dose independent rect. 6 6
726 542.95 humidity 60 43200 < th dose independent rect. 20 13
727 542.98 humidity 90 14400 < th dose independent rect. 6 1
729 543.01 wind 5 14400 > th dose dependent rect. 18 1
741 543.18 wind 1 4320 < th dose independent rect. 6 1
746 543.21 radiation 20 4320 < th dose dependent rect. 16 21
752 543.24 wind 3 10 < th dose dependent rect. 8 1
774 543.46 wind 1 1440 > th dose independent rect. 6 6
783 543.57 radiation 40 1440 > th dose independent rect. 15 18
861 544.42 wind 1 1440 > th dose independent rect. 6 4
863 544.46 radiation 40 4320 < th dose independent sin 12 NA
934 544.98 humidity 60 43200 < th dose independent rect. 2 7
936 545.02 wind 1 4320 > th dose independent rect. 5 2
964 545.18 radiation 10 4320 > th dose independent rect. 17 1
988 545.25 humidity 60 43200 > th dose independent rect. 2 7
989 545.26 radiation 40 4320 > th dose dependent rect. 10 23